BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0165.0057.p
         (172 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310626|ref|YP_003774718.1| filamentous hemagglutinin prote...    79   2e-16
gi|300312548|ref|YP_003776640.1| filamentous hemagglutinin outer...    60   7e-11

>gi|300310626|ref|YP_003774718.1| filamentous hemagglutinin protein
           [Herbaspirillum seropedicae SmR1]
          Length = 2658

 Score = 79.0 bits (193), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 68/114 (59%), Gaps = 8/114 (7%)

Query: 5   GVNARNIVNQVTSTNPSLIQGDITVLGSRANVIIANPNGITVNGGSFVNTGNVALTTGQV 64
           G  AR I+N+VTST+PS ++G   V G RA VIIANPNGI+ +G  F+NT    LTTG  
Sbjct: 114 GGAARVILNEVTSTSPSQLRGYTEVAGQRAEVIIANPNGISCDGCGFINTSRGVLTTG-- 171

Query: 65  SFNDITLSPGNVQRNIILNTSQGQIVIGPNGLSGAMLD-LELIAKQITVNGAVL 117
               + L  GN         S+G I IG  GL+GA  D L+LIA+ + VNG + 
Sbjct: 172 ----VPLFGGNGSLE-AFRVSRGAIQIGSGGLNGANTDQLDLIARSVQVNGELW 220


>gi|300312548|ref|YP_003776640.1| filamentous hemagglutinin outer
           membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 2685

 Score = 60.5 bits (145), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 9/112 (8%)

Query: 8   ARNIVNQVTSTNPSLIQGDITVLGSRANVIIANPNGITVNGGSFVNTGNVALTTGQVSFN 67
           AR I+N+V S+NPS+++G + V G RA VIIANP+G+T +G  F+N     LTTG    N
Sbjct: 151 ARVILNEVNSSNPSMLRGFVEVAGDRAQVIIANPSGVTCDGCGFINASRSTLTTGTPIIN 210

Query: 68  DITLSPGNVQRNIILNTSQGQIVIGPNGLSGAMLDL-ELIAKQITVNGAVLN 118
           + +L  G + R        G + I  NGL+ +     +LIA+   +N  + +
Sbjct: 211 NGSLD-GYLVRG-------GVVSIKGNGLNDSQSSFTDLIARAAKINAGIWS 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 397,971
Number of extensions: 14041
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 2
Length of query: 172
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,245,805
Effective search space: 115859865
Effective search space used: 115859865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)