BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0165.0041.p
         (333 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311760|ref|YP_003775852.1| transcription regulator protein...    77   1e-15
gi|300311726|ref|YP_003775818.1| AraC family transcription regul...    76   4e-15

>gi|300311760|ref|YP_003775852.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 319

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 60/99 (60%)

Query: 23  RXLASAQLAQLLFIQILRAHLNNSGPAPTGWLRALGEPRLAPALRLMHGDPGRAWHLEEL 82
           R +  A+L ++L I+ LR+  + +  A  G LR L + RLA A+R +H  P + W++  L
Sbjct: 166 REVVLARLLEVLLIEALRSSNDPTVAASPGLLRGLADVRLAQAIRALHAQPAQDWNVPRL 225

Query: 83  AEACAMSRTTFASRFKTAAGVAPLTYLTEWRMRLAQRAL 121
           A   A+SR++F  RF+   G+ P+ YL  WRM LA+R L
Sbjct: 226 ARVAALSRSSFFERFRREVGLTPMDYLLAWRMALAKRLL 264


>gi|300311726|ref|YP_003775818.1| AraC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 59/94 (62%), Gaps = 2/94 (2%)

Query: 28  AQLAQLLFIQILRAHLNNSGPAPTGWLRALGEPRLAPALRLMHGDPGRAWHLEELAEACA 87
           ++LA++L ++ +R+  + S  AP G LR LG+ RLA AL+ MH    + W + +LA   A
Sbjct: 165 SRLAEMLLVEAMRSSTSTS--APPGLLRGLGDERLAVALKHMHARIEQRWSVAQLARIAA 222

Query: 88  MSRTTFASRFKTAAGVAPLTYLTEWRMRLAQRAL 121
           +SR++F  RF    GVAP+ YL  WRM +A+  L
Sbjct: 223 LSRSSFFERFTRTLGVAPMAYLLAWRMEIARELL 256


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,025,132
Number of extensions: 41152
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 3
Length of query: 333
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,212,660
Effective search space: 299527020
Effective search space used: 299527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)