BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0165.0040.p (517 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310865|ref|YP_003774957.1| response regulator containing a... 454 e-129 gi|300312843|ref|YP_003776935.1| response regulator containing a... 303 2e-83 gi|300313329|ref|YP_003777421.1| transmembrane protein [Herbaspi... 211 8e-56 gi|300313918|ref|YP_003778010.1| transmembrane protein [Herbaspi... 182 5e-47 gi|300313993|ref|YP_003778085.1| diguanylate cyclase/phosphodies... 165 1e-41 >gi|300310865|ref|YP_003774957.1| response regulator containing a CheY-like receiver domain and a GGDEF domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 454 bits (1167), Expect = e-129, Method: Compositional matrix adjust. Identities = 236/484 (48%), Positives = 326/484 (67%), Gaps = 13/484 (2%) Query: 28 EFWSGLREHDVELTESTRATSNVAMALAQHADQTFNEVDIVLLGLLERLEKDGNSKSGLA 87 E W+ R +V L+EST SNVA+AL QHA+Q+ E DIVL + E L+ + S S Sbjct: 41 EAWTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRSASARI 100 Query: 88 RTHDLMVSRVGGLPQLAGLFVYDDQGNWVVNSQPTLEKRFNNSDRDYFIYHRLHRVEKPF 147 RTHD M+ V LPQLA L V D+QG V +SQ + + + DYF YH+ R ++PF Sbjct: 101 RTHDFMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRRSDRPF 160 Query: 148 IGKPIKSKSTGQWILTISRRINKIDGSFGGVVLGTIDLXR----------GKNGAIMLGS 197 IG+P++S TGQ LT+SRRIN +DGSF GV++ IDL G +G I+ G Sbjct: 161 IGQPMRSHVTGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGVILFGL 220 Query: 198 LDGTVLHRRPLLPDSVGKNLENSPLFQEHVRRSGSGSVEIRSTQDGVVRINSFRYLADHP 257 G+++ RRPLL D ++ S ++H+ ++ GS +RS +DGV RI+ F+ +P Sbjct: 221 TGGSLILRRPLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQGEAYP 280 Query: 258 LFIIVAMSKDEVLAEWMFHVWVRVIGVAAVLIILYYGGTKMVAQVKRREVAELDAIKSKR 317 +F +VA++KD++L +W HVWVR IGV +L ++ +GG ++V V RE AE AI +++ Sbjct: 281 IFTVVALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQAIAARQ 340 Query: 318 KLESLYKTLEAQSQKDGLTAVFNRRYFDDSLSSQLALLNRSGGILSLIMVDVDHFKRFND 377 +LESLY+TLEAQSQKDGLT VFNRRYFD +L+++LA LNR+G LSL+M+DVDHFK+FND Sbjct: 341 ELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDHFKQFND 400 Query: 378 TYGHAAGDVCLQRVAAAIQTAVQREGDVVARYGGEEFAVILPECDKAGALIVARSLINSL 437 TYGHAAGDVCL++VAAAI T +R+GD+VARYGGEEFAVILP C A +A ++ ++ Sbjct: 401 TYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHRVVQAV 460 Query: 438 HXPPFLKIEHASSGTGFITVSVGVTSIAVEPGHAITPRKMIEAADEGLYLAKDQGRDQVI 497 L+I H S G +T+SVGV S+A I PR++I++AD LY AK++GRD+ + Sbjct: 461 RG---LEIAHERSPMGVVTISVGVASLASGKSLLIEPRELIDSADGALYRAKEEGRDRAV 517 Query: 498 FREF 501 R F Sbjct: 518 QRPF 521 >gi|300312843|ref|YP_003776935.1| response regulator containing a CheY-like receiver and a GGDEF domains protein [Herbaspirillum seropedicae SmR1] Length = 525 Score = 303 bits (776), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 187/504 (37%), Positives = 285/504 (56%), Gaps = 13/504 (2%) Query: 3 NRSRISASGVARIFVVSVCLVIVVLEFWSGLREHDVELTESTRATSNVAMALAQHADQTF 62 + +R S + AR+FVV +C I W + V+L + + NVA ALA+HA Sbjct: 10 SHARHSVARRARLFVVLICAAIAGGHLWQSMTARGVQLENNRSYSGNVAKALARHAYDVL 69 Query: 63 NEVDIVLLGLLERLEKDGNSKSGLARTHDLMVSRVGGLPQLAGLFVYDDQGNWVVNSQPT 122 D +LL + +R++ G + + L ++ +PQL GL+V+D+ G ++ S Sbjct: 70 QATDGLLLDMSDRIDSVGIAHARLVDLMPMLRRLSSEMPQLDGLYVFDEHGKRLLTSSAP 129 Query: 123 LEKRFNNSDRDYFIYHRLHRVEKPFIGKPIKSKSTGQWILTISRRINKIDGSFGGVVLGT 182 NNSDRDYFI+HR H P +GK + S+STG+WI+ +SRR+N DGSF GV+L T Sbjct: 130 PLAPANNSDRDYFIWHRDHDDVGPHVGKALLSRSTGRWIIPMSRRLNHPDGSFAGVLLAT 189 Query: 183 IDLXR----------GKNGAIMLGSLDGTVLHRRPLLPDSVGKNLENSPLFQEHVRRSGS 232 +D+ GK G+I L DGT+L R P P + ++ LF E + S Sbjct: 190 LDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMPFDPGYINRDFSQGRLFLEGLPHSPF 249 Query: 233 GSVEIRSTQDGVVRINSFRYLADHPLFIIVAMSKDEVLAEWMFHVWVRVIGVAAVLIILY 292 G +E+ S D R S++ + +PL ++V ++++E LA+W +V V +L I+ Sbjct: 250 GYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLAREEALADWKQQTFVYGAAVLLLLAIIG 309 Query: 293 YGGTKMVAQVKRREVAELDAIKSKRKLESLYKTLEAQSQKDGLTAVFNRRYFDDSLSSQL 352 G ++V Q++ R AE A+++ +L+ LE + +DGLT + NRR+ D L ++ Sbjct: 310 VFGWRLVGQIELRLRAEDRALQAMGELQMANHRLEMLAHQDGLTGLANRRHLDTMLETEF 369 Query: 353 ALLNRSGGILSLIMVDVDHFKRFNDTYGHAAGDVCLQRVAAAIQTAVQREGDVVARYGGE 412 RSG L+LIM+DVD FK++ND YGH AGD CL+RVA ++ +R GD+ ARYGGE Sbjct: 370 KRAERSGAALALIMIDVDFFKQYNDLYGHQAGDECLRRVAGVLKERQRRPGDLAARYGGE 429 Query: 413 EFAVILPECDKAGALIVARSLINSLHXPPFLKIEHASSGTGFITVSVGVTSIAVEPGHAI 472 E A++LP D GA VA L + L++ H + G +TVSVGV ++ + P A Sbjct: 430 EMAMLLPGTDAEGACAVAEKLRAGIQA---LELPHRGNPVGVVTVSVGVCALELLPSAAR 486 Query: 473 TPRKMIEAADEGLYLAKDQGRDQV 496 + + ++ AAD LY AK +GR+QV Sbjct: 487 SVQALLGAADAALYEAKHEGRNQV 510 >gi|300313329|ref|YP_003777421.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 501 Score = 211 bits (538), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 134/386 (34%), Positives = 213/386 (55%), Gaps = 39/386 (10%) Query: 128 NNSDRDYFIYHRLHRVEKPFIGKPIKSKSTGQW-ILTISRRINKIDGSFGGVVLGTID-- 184 N S+R YF HR FI +PIK+ + ++ +S+R+++ DGSF GVVL +D Sbjct: 126 NYSERTYFTVHRDSADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLMALDMS 185 Query: 185 --------LXRGKNGAIMLGSLDGTVLHRRPLLPDSVGKNLENSPLFQE--HVRRSGSGS 234 L G++G + L S DG R P P S+G+ + N+P FQ + G+ Sbjct: 186 YFRDLFTGLTLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLVDNDGN 245 Query: 235 VEIRSTQDGVVRINSFRYLADHPLFIIVAMSKDEVLAEWMFHVWVRVIGVAAVLIILYYG 294 R+ DGV R+ +FR + D PL +++ S+ ++F W + +L+I++ Sbjct: 246 FFARAHTDGVERLYTFRRIPDAPLIVLLGRSE-----RFIFKTWYDTLYSVLLLLIIFTA 300 Query: 295 GTKMVAQVKRREVAELDAIKSKRKLESLYKTLEAQSQKDGLTAVFNRRYFDDSLSSQLAL 354 ++ + RRE+ L + ++++LE L +T DGLT + NRR D++L LA+ Sbjct: 301 LAGVLLMLVRREL--LKRVAAEKQLEDLART-------DGLTGLLNRRSLDEAL---LAV 348 Query: 355 LNRS----GGILSLIMVDVDHFKRFNDTYGHAAGDVCLQRVAAAIQTAVQREGDVVARYG 410 RS S + +DVD+FKR+NDTYGH GD LQ VAA ++ +QR+ D+ RYG Sbjct: 349 WQRSQRSPTAGFSTLFIDVDYFKRYNDTYGHEMGDTVLQAVAAVLREHLQRQNDLAGRYG 408 Query: 411 GEEFAVILPECDKAGALIVARSLINSLHXPPFLKIEHASSGTGFITVSVGVTSIAVEPGH 470 GEEF V+L + D+ GAL +A+ L +++ I H+ S G I+VS+GV ++ P Sbjct: 409 GEEFVVLLEQTDEHGALRMAQQLCEAIYNR---GIPHSGSPLGVISVSIGVATMNRAPHQ 465 Query: 471 AITPRKMIEAADEGLYLAKDQGRDQV 496 + ++ AAD LY+AK +GR++V Sbjct: 466 RM--EDVLNAADHALYIAKREGRNRV 489 >gi|300313918|ref|YP_003778010.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 182 bits (462), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/381 (31%), Positives = 194/381 (50%), Gaps = 33/381 (8%) Query: 130 SDRDYFIYHRLHRVEKPFIGKPIKSKSTGQW-ILTISRRINKIDGSFGGVVLGTIDLXR- 187 +DR YFI HR ++ +P+++ + ++ +S+R++ DGSF GVV+ +DL Sbjct: 148 ADRAYFIAHRDSPTVGLYVSRPMQASLGNELQVVVLSKRLSNEDGSFAGVVVMALDLAYF 207 Query: 188 ---------GKNGAIMLGSLDGTVLHRRPLLPDSVGKNLENSPLFQE--HVRRSGSGSVE 236 G G I L S +G R P +G+++ + FQ + GS Sbjct: 208 RELFEGLALGDEGIISLYSDEGIAYMRVPYRETIIGRDISQTGNFQRLRAMLSEEEGSFF 267 Query: 237 IRSTQDGVVRINSFRYLADHPLFIIVAMSKDEVLAEWMFHVWVRVIGVAAVLIILYYGGT 296 +T DGV R+ +FR + PL + V +++ + W + ++ +A ++ + Sbjct: 268 AHATNDGVRRLYTFRRIPGSPLIVFVGYAEEAIFKTWRKTFYAVLVSLAIFGLLTAWLLL 327 Query: 297 KMVAQVKRREVAELDAIKSKRKLESLYKTLEAQSQKDGLTAVFNRRYFDDSLSSQLALLN 356 + +++RR AE R+LE+L +T DGLT + NRR D++L + Sbjct: 328 HVRQELRRRVTAE-------RQLEALART-------DGLTDLLNRRALDEALQATWERCQ 373 Query: 357 RS-GGILSLIMVDVDHFKRFNDTYGHAAGDVCLQRVAAAIQTAVQREGDVVARYGGEEFA 415 R+ G S++ +DVD+FK +NDTYGH GD L+ VAA + + R D RYGGEEF Sbjct: 374 RNLGASFSVLFIDVDYFKAYNDTYGHKLGDTVLKEVAATLTARLPRHTDCAGRYGGEEFV 433 Query: 416 VILPECDKAGALIVARSLINSLHXPPFLKIEHASSGTGFITVSVGVTSIAVEPGHAITPR 475 V+L + D GA ++A+ L +++ I H SS +T+SVGV ++ E H Sbjct: 434 VLLEQTDLQGAQMMAQRLCDAVRER---HIAHTSSPLAVVTISVGVATL--ERDHHRRVE 488 Query: 476 KMIEAADEGLYLAKDQGRDQV 496 ++ AAD LY AK GRD+V Sbjct: 489 DVLNAADAALYRAKQAGRDRV 509 >gi|300313993|ref|YP_003778085.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 573 Score = 165 bits (417), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 88/196 (44%), Positives = 125/196 (63%), Gaps = 5/196 (2%) Query: 303 KRREVAELDAIKSKRKLESLYKTLEAQSQKDGLTAVFNRRYFDDSLSSQLALLNRSGGIL 362 + REV E R+LE + LEA S DGLT V NRR FD++L++++ RSG L Sbjct: 375 QNREVLEEQVRLRTRELERANRKLEALSATDGLTGVANRRRFDEALANEMRRAVRSGQSL 434 Query: 363 SLIMVDVDHFKRFNDTYGHAAGDVCLQRVAAAIQTAVQREGDVVARYGGEEFAVILPECD 422 +L+M+DVD+FK++ND YGH AGD CL+ VA +Q + +R D+VARYGGEEF+VI+ ECD Sbjct: 435 ALLMLDVDYFKKYNDRYGHLAGDECLRIVARVLQKSSRRATDLVARYGGEEFSVIIAECD 494 Query: 423 KAGALIVARSLINSLHXPPFLKIEHASSGTGFITVSVGVTSIAVEPGHAITPRKMIEAAD 482 AL A ++ ++ LK+ HA S G+I+ S+GV + P P +M+ AD Sbjct: 495 TTQALQQAENICQAIFE---LKLPHADSPFGYISASIGVAVLL--PDEHTAPEQMVRIAD 549 Query: 483 EGLYLAKDQGRDQVIF 498 + LY AK QGR++V+ Sbjct: 550 QALYHAKYQGRNRVVL 565 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,559,894 Number of extensions: 65001 Number of successful extensions: 298 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 217 Number of HSP's successfully gapped: 41 Length of query: 517 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 428 Effective length of database: 1,198,455 Effective search space: 512938740 Effective search space used: 512938740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)