BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0165.0037.p
         (106 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra...   102   9e-24
gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis tra...    97   3e-22
gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra...    85   1e-18
gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis tra...    83   4e-18
gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra...    82   8e-18

>gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 542

 Score =  102 bits (253), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 66/77 (85%)

Query: 1   MAEVVQSVQSVTDIMSEIAAASSEQHTGIAQINIAITQMDEVTQQNAALVEQATAAAQAM 60
           M EVV+S+Q V D+MSEI AAS+EQ +GI+QINIAI+QMDEVTQQNAALVE++ +AAQ+M
Sbjct: 442 MDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAISQMDEVTQQNAALVEESASAAQSM 501

Query: 61  ADQAARLLASVAIFKVE 77
           A QA  L  +VA+F++E
Sbjct: 502 AQQANSLRDAVAVFRIE 518


>gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 596

 Score = 97.1 bits (240), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 71/97 (73%)

Query: 1   MAEVVQSVQSVTDIMSEIAAASSEQHTGIAQINIAITQMDEVTQQNAALVEQATAAAQAM 60
           M++V+ +VQ VTDIMSEI+AAS+EQ  GI Q++ A+TQMDE TQQNAALVEQA+AAA+++
Sbjct: 437 MSDVINAVQRVTDIMSEISAASNEQSAGIDQVSHAVTQMDEATQQNAALVEQASAAAKSL 496

Query: 61  ADQAARLLASVAIFKVEASGVSAMAHPAAIKTITLPP 97
             QA  L+  VAIF+V  +G +     AA    T+ P
Sbjct: 497 EQQAQALMQEVAIFRVNGAGPTVKPPAAAASRATVKP 533


>gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 536

 Score = 85.1 bits (209), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 73/101 (72%), Gaps = 6/101 (5%)

Query: 1   MAEVVQSVQSVTDIMSEIAAASSEQHTGIAQINIAITQMDEVTQQNAALVEQATAAAQAM 60
           M EVV SV+ VTDI++EI+AAS+EQ  GI QIN+AITQMD+VTQQNAALVE+A AAA +M
Sbjct: 439 MQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQVTQQNAALVEEAAAAAASM 498

Query: 61  ADQAARLLASVAIFKVEASGVSAMAHPAAIKTITLPPTSPV 101
             QA RL+  V++F++      +   P   + I + P+SPV
Sbjct: 499 QTQAGRLMQMVSVFRL------SEREPLVRREIDVTPSSPV 533


>gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 596

 Score = 83.2 bits (204), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/101 (60%), Positives = 73/101 (72%), Gaps = 1/101 (0%)

Query: 1   MAEVVQSVQSVTDIMSEIAAASSEQHTGIAQINIAITQMDEVTQQNAALVEQATAAAQAM 60
           M+EVV SVQ VTDI+ EIA AS EQ TGI Q+N AITQMDEVTQQNAALVE+A AAAQ++
Sbjct: 440 MSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDEVTQQNAALVEEAAAAAQSL 499

Query: 61  ADQAARLLASVAIFKVEASGVSAMAHPAAIKTITLPPTSPV 101
             QA  L+ +V+IFK+EA  V+    PA+ K    P   PV
Sbjct: 500 QAQATNLVGAVSIFKIEAHQVAPAGKPAS-KPRAAPAARPV 539


>gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 581

 Score = 82.0 bits (201), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 69/87 (79%)

Query: 1   MAEVVQSVQSVTDIMSEIAAASSEQHTGIAQINIAITQMDEVTQQNAALVEQATAAAQAM 60
           M +VV SV+SVTDI++EI+AAS+EQ +GI +IN A+TQMDE TQQNAALVEQA AAA++M
Sbjct: 441 MEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVEQAAAAAKSM 500

Query: 61  ADQAARLLASVAIFKVEASGVSAMAHP 87
            +QA RL  S++IFK+E    S  A P
Sbjct: 501 QEQAVRLTQSISIFKLEQGAASIPAAP 527


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.117    0.290 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 190,311
Number of extensions: 3698
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 63
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 63
Length of query: 106
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 34
Effective length of database: 1,278,950
Effective search space: 43484300
Effective search space used: 43484300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 123 (52.0 bits)