BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0165.0033.p
         (212 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis tra...   108   3e-25
gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra...   102   2e-23
gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra...    86   2e-18
gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen...    84   1e-17
gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra...    76   2e-15

>gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 553

 Score =  108 bits (270), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/76 (84%), Positives = 68/76 (89%)

Query: 1   MVEVVTSVKRVTDVVAEISNASQEQSNGIVQVNLAITQMDEATQQNSALVEEAAAAANAM 60
           M  VVTSVKRVTDVVAEIS+ASQEQS+GI QVNLAIT MDEATQQNSALVEEAAAAAN+M
Sbjct: 447 MENVVTSVKRVTDVVAEISHASQEQSHGIAQVNLAITHMDEATQQNSALVEEAAAAANSM 506

Query: 61  MEQAASLAGIVSTFKL 76
             QA  LAG+VSTFKL
Sbjct: 507 KTQAEQLAGLVSTFKL 522


>gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 542

 Score =  102 bits (255), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/76 (78%), Positives = 67/76 (88%)

Query: 1   MVEVVTSVKRVTDVVAEISNASQEQSNGIVQVNLAITQMDEATQQNSALVEEAAAAANAM 60
           M  VV SVKRVTDVVAEIS ASQEQS+GI QVN AIT MDEATQQNSALVEEAAAAAN+M
Sbjct: 437 MENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVEEAAAAANSM 496

Query: 61  MEQAASLAGIVSTFKL 76
            EQA +L+G+V+TF+L
Sbjct: 497 KEQAGALSGLVATFRL 512


>gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 515

 Score = 86.3 bits (212), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/76 (71%), Positives = 65/76 (85%)

Query: 1   MVEVVTSVKRVTDVVAEISNASQEQSNGIVQVNLAITQMDEATQQNSALVEEAAAAANAM 60
           M EVV SV+RVTDVVAEIS A+QEQS GI +VNLAITQMDE TQQN+ALVE+AAAAA+++
Sbjct: 439 MTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDETTQQNAALVEQAAAAADSL 498

Query: 61  MEQAASLAGIVSTFKL 76
             QA++LA +V  FKL
Sbjct: 499 KGQASNLAAVVGKFKL 514


>gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis
           sensory transducer protein [Herbaspirillum seropedicae
           SmR1]
          Length = 684

 Score = 83.6 bits (205), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/78 (66%), Positives = 65/78 (83%)

Query: 1   MVEVVTSVKRVTDVVAEISNASQEQSNGIVQVNLAITQMDEATQQNSALVEEAAAAANAM 60
           M EVV+SV+RVTD+V EIS ASQEQS+GI +V  A+ QMDEATQQN+ALVE+AAAAA ++
Sbjct: 518 MEEVVSSVRRVTDIVGEISAASQEQSSGITEVGNAVNQMDEATQQNAALVEQAAAAAKSL 577

Query: 61  MEQAASLAGIVSTFKLRD 78
            EQAA LA +V+ FKL +
Sbjct: 578 QEQAAHLAAVVAGFKLDE 595


>gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 609

 Score = 76.3 bits (186), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/80 (67%), Positives = 66/80 (82%), Gaps = 1/80 (1%)

Query: 1   MVEVVTSVKRVTDVVAEISNASQEQSNGIVQVNLAITQMDEATQQNSALVEEAAAAANAM 60
           M EVV SV+RVTD+V EIS+ASQEQS GI +V  AITQMDE TQQN+ALVE+AAAAA ++
Sbjct: 439 MTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQQNAALVEQAAAAAQSL 498

Query: 61  MEQAASLAGIVSTFKLRDGS 80
            +QAA+LAG+V  F + DGS
Sbjct: 499 QDQAATLAGLVGRFHV-DGS 517


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.129    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 493,986
Number of extensions: 16484
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 60
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 60
Length of query: 212
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,236,335
Effective search space: 161959885
Effective search space used: 161959885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)