BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0165.0032.p (451 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 585 e-168 gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis tra... 578 e-166 gi|300311037|ref|YP_003775129.1| methyl-accepting chemotaxis tra... 475 e-135 gi|300313891|ref|YP_003777983.1| methyl-accepting chemotaxis I p... 440 e-124 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 291 6e-80 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 585 bits (1509), Expect = e-168, Method: Compositional matrix adjust. Identities = 302/396 (76%), Positives = 352/396 (88%) Query: 4 FRNMKIGTKLSLGFAALLVLTIILAGISLYSIMSLTRSIKSADIVQEQKLSPLYVAREAL 63 F++MKIGTKL+LGF AL+VLTI+++GISL SI +LT SIK+ VQ+QKL+PLY AREAL Sbjct: 2 FKHMKIGTKLALGFGALVVLTILVSGISLSSIRALTSSIKAVLAVQDQKLAPLYAAREAL 61 Query: 64 DQTGLAARNAYVFRNDADAQKELKIVDEQKRIYMDTLKTLEPVFPDNKDFEKARAGLLQM 123 DQTG+AARNAYVFR+DADAQKEL IVDEQK++Y+ +K L P+F NK+FEK R+G+LQM Sbjct: 62 DQTGIAARNAYVFRSDADAQKELAIVDEQKQLYLKAIKDLGPLFAGNKEFEKVRSGMLQM 121 Query: 124 AEELKRPRNYREAGKMEEFRDFLVNECSPLRRQIVLDINKVIAQVEAENVQAHDLTEQMA 183 AEELKRPR YRE+G+ EE+RDFLVNECSPLRRQIV DI V+AQVEAEN +A D T++MA Sbjct: 122 AEELKRPRLYRESGRSEEYRDFLVNECSPLRRQIVSDIGTVLAQVEAENNRAQDATDKMA 181 Query: 184 KQAVTLVAVLTLVVAVVSGIVGVLITRGLLKQLGGEPAYAADIARKIAAGDLSCDVQTKP 243 + A VAVLTLVV V+S ++ VL+TRGLLKQLGGEP YAA IA++IA GDL+ +VQTK Sbjct: 182 QLAALTVAVLTLVVVVISILIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKT 241 Query: 244 GDDASLLFAIKSMRDSLSSIVSQVREGTQTIEQASSEIASGNLDLSARTEQQAGSLEETA 303 GD++SLLFAIK+MRDSL SIV+QVR+GT TIEQASSEIASGNLDLS+RTEQQA SLEETA Sbjct: 242 GDNSSLLFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETA 301 Query: 304 SAMEQITSTVKQNADNARQANQLAVSASDVAIQGGEVVGQVVTTMAGINDSSRKIVDIIS 363 SAME++ +TVKQNADNA+QA+QLAVSAS+VA QGGEVV QVVTTM GIN SSRKIVDIIS Sbjct: 302 SAMEELMTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIIS 361 Query: 364 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASQ 399 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS+ Sbjct: 362 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 397 >gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 578 bits (1489), Expect = e-166, Method: Compositional matrix adjust. Identities = 309/399 (77%), Positives = 351/399 (87%) Query: 1 MSSFRNMKIGTKLSLGFAALLVLTIILAGISLYSIMSLTRSIKSADIVQEQKLSPLYVAR 60 MS F+NMKIGTKLSLGFA LL LTIILAGISL+SI LT SIK+AD VQ ++L PLY+AR Sbjct: 9 MSGFKNMKIGTKLSLGFALLLTLTIILAGISLFSINRLTGSIKAADDVQVERLLPLYLAR 68 Query: 61 EALDQTGLAARNAYVFRNDADAQKELKIVDEQKRIYMDTLKTLEPVFPDNKDFEKARAGL 120 EALDQTGLAARNAYVFR +ADAQKEL IVDEQK+IY+ LK +EP F +K F+K R GL Sbjct: 69 EALDQTGLAARNAYVFRTEADAQKELAIVDEQKQIYLKALKDMEPHFVGHKGFDKVRTGL 128 Query: 121 LQMAEELKRPRNYREAGKMEEFRDFLVNECSPLRRQIVLDINKVIAQVEAENVQAHDLTE 180 LQMAEELKRPR YRE+GKMEEFRDFLVNECSPLRRQIVLDINKVI + +A+N++AH T Sbjct: 129 LQMAEELKRPRIYRESGKMEEFRDFLVNECSPLRRQIVLDINKVIEEADADNIKAHQTTV 188 Query: 181 QMAKQAVTLVAVLTLVVAVVSGIVGVLITRGLLKQLGGEPAYAADIARKIAAGDLSCDVQ 240 MA A +LVAVLT +VAV+S +V +ITR LLKQLGGEPAYAADIA++IA+GDL+ DV Sbjct: 189 DMAAMASSLVAVLTGIVAVISALVAFVITRSLLKQLGGEPAYAADIAQQIASGDLTADVD 248 Query: 241 TKPGDDASLLFAIKSMRDSLSSIVSQVREGTQTIEQASSEIASGNLDLSARTEQQAGSLE 300 KPGD SLLFAIK MRD+L++IV +VREGT IEQAS+EIA+GN+DLS+RTEQQAG+LE Sbjct: 249 AKPGDTTSLLFAIKKMRDNLAAIVGKVREGTHAIEQASAEIATGNMDLSSRTEQQAGALE 308 Query: 301 ETASAMEQITSTVKQNADNARQANQLAVSASDVAIQGGEVVGQVVTTMAGINDSSRKIVD 360 ETASAME++ STVKQNADNARQA+QLAVSASDVA QGG+VVGQVV+TM GIN SSRKIVD Sbjct: 309 ETASAMEELMSTVKQNADNARQASQLAVSASDVASQGGQVVGQVVSTMEGINASSRKIVD 368 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASQ 399 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS+ Sbjct: 369 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 407 >gi|300311037|ref|YP_003775129.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 522 Score = 475 bits (1223), Expect = e-135, Method: Compositional matrix adjust. Identities = 251/399 (62%), Positives = 310/399 (77%) Query: 1 MSSFRNMKIGTKLSLGFAALLVLTIILAGISLYSIMSLTRSIKSADIVQEQKLSPLYVAR 60 M MKIG KLSLGFA+ L+L + L ++ I SL +I A+ ++ ++L PLY+AR Sbjct: 1 MKVLSEMKIGVKLSLGFASQLLLLLALVAAAMLGINSLRETIVYANKLKNEQLEPLYLAR 60 Query: 61 EALDQTGLAARNAYVFRNDADAQKELKIVDEQKRIYMDTLKTLEPVFPDNKDFEKARAGL 120 EALDQTG+AARNAYVF +DADA+ EL IVDEQK IY+ L+ LEP D F R GL Sbjct: 61 EALDQTGIAARNAYVFVSDADAKNELNIVDEQKAIYLQQLQLLEPRLADRAGFAAVREGL 120 Query: 121 LQMAEELKRPRNYREAGKMEEFRDFLVNECSPLRRQIVLDINKVIAQVEAENVQAHDLTE 180 LQMAEELKRPR YR++G ME +RDFLVNECSPLRR+IV +IN++I Q+ AE+ A D E Sbjct: 121 LQMAEELKRPRRYRDSGAMEAYRDFLVNECSPLRRKIVANINQLIDQISAESTTAGDTAE 180 Query: 181 QMAKQAVTLVAVLTLVVAVVSGIVGVLITRGLLKQLGGEPAYAADIARKIAAGDLSCDVQ 240 AKQA+ +++L + +++ ++ ITR LL+QLGGEPAYA IA++IA GDL+ DV Sbjct: 181 NAAKQALLFISLLAGLALLIAVVIAFFITRSLLRQLGGEPAYAMGIAQRIAHGDLAVDVV 240 Query: 241 TKPGDDASLLFAIKSMRDSLSSIVSQVREGTQTIEQASSEIASGNLDLSARTEQQAGSLE 300 T+ D +SLL+AIK MRDSLS IV+QVR+GT +IE+A SEI+SGN DLS RTE+QA SLE Sbjct: 241 TRSHDQSSLLYAIKMMRDSLSRIVAQVRQGTDSIERACSEISSGNADLSGRTERQASSLE 300 Query: 301 ETASAMEQITSTVKQNADNARQANQLAVSASDVAIQGGEVVGQVVTTMAGINDSSRKIVD 360 ETASAMEQITS V+Q+ADNA QANQLA SAS +A++GG+++G VV TM I+ SS KIVD Sbjct: 301 ETASAMEQITSAVRQSADNAIQANQLAGSASSIALKGGQMMGDVVATMEDIHHSSVKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASQ 399 IISVIDGIAFQTNILALNAAVEAARAGE GRGFAVVAS+ Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASE 399 >gi|300313891|ref|YP_003777983.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 440 bits (1132), Expect = e-124, Method: Compositional matrix adjust. Identities = 228/399 (57%), Positives = 291/399 (72%) Query: 1 MSSFRNMKIGTKLSLGFAALLVLTIILAGISLYSIMSLTRSIKSADIVQEQKLSPLYVAR 60 M+ +KIGT+L LGF ++VL +IL +L + +++ +++ + V + KL PLYVAR Sbjct: 1 MNQLSKLKIGTQLRLGFGIVIVLMLILITFALMRMNAISAAVQYQETVTDTKLEPLYVAR 60 Query: 61 EALDQTGLAARNAYVFRNDADAQKELKIVDEQKRIYMDTLKTLEPVFPDNKDFEKARAGL 120 EALDQTGLAARNAY+F + A+A KEL ++D+QK +Y+D L+ LEPV FEKA+AGL Sbjct: 61 EALDQTGLAARNAYIFHDQAEALKELALLDQQKALYLDALRQLEPVLAGQAQFEKAKAGL 120 Query: 121 LQMAEELKRPRNYREAGKMEEFRDFLVNECSPLRRQIVLDINKVIAQVEAENVQAHDLTE 180 L MAEELKRPR YRE+G+ME + +FLV ECSPLRRQIV DI+ ++ V+ E A D + Sbjct: 121 LAMAEELKRPRKYRESGQMEAYGEFLVKECSPLRRQIVQDIDALLKVVQRETKAAGDRAD 180 Query: 181 QMAKQAVTLVAVLTLVVAVVSGIVGVLITRGLLKQLGGEPAYAADIARKIAAGDLSCDVQ 240 + ++ L+ ++ VS LI + LL QLGGEP YA +I +IA G+LS V Sbjct: 181 ALFASSLRLIMACAAIILGVSIATAWLIRKSLLGQLGGEPRYAVEITGRIAHGELSAPVD 240 Query: 241 TKPGDDASLLFAIKSMRDSLSSIVSQVREGTQTIEQASSEIASGNLDLSARTEQQAGSLE 300 T PGD +SLL+ I+ MRD L+S+V QVR GT I ASSEIA GN +LS RTEQQA +LE Sbjct: 241 TAPGDRSSLLYEIRVMRDKLASLVQQVRVGTHAIADASSEIAVGNQNLSERTEQQADTLE 300 Query: 301 ETASAMEQITSTVKQNADNARQANQLAVSASDVAIQGGEVVGQVVTTMAGINDSSRKIVD 360 +T +AM+++T V++NADNA+QA LA SASDVA Q G VV QVV TM I+ SSRKIVD Sbjct: 301 KTVAAMDELTQAVRRNADNAQQAKHLAGSASDVASQAGTVVQQVVDTMGQIDASSRKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASQ 399 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA++ Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAE 399 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 291 bits (746), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 179/407 (43%), Positives = 261/407 (64%), Gaps = 20/407 (4%) Query: 7 MKIGTKLSLGFAALLVLTIILAGISLYSIMSLTRSIKSADIVQEQKLSPLYVAREALDQT 66 MK+GT+L LGFA +++L +++ G ++++ + V E K + +E L+ Sbjct: 5 MKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTH---VVEVKNPESALVKEMLETV 61 Query: 67 G---LAARNAYVFRNDADAQKELKIVDEQKRIYMDTLKTLEPVFPDNKDF-EKARAGLLQ 122 G ++ RN + D E + ++ Q Y + L+ +F ++ D ++ +A L + Sbjct: 62 GERSISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALPK 121 Query: 123 MAEELKRPRNY----REAGKMEE---FRDFLVNECSPLRRQIVLDINKVIA---QVEAEN 172 +A + + E GK E FL + P+++ +++ + A Q+ E Sbjct: 122 IAAQASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNKEA 181 Query: 173 VQAHDLTEQMAKQAVTLVAVLTLVVAVVSGIVGVLITRGLLKQLGGEPAYAADIARKIAA 232 +A + A+ + L++ + +V AV++ +TR LL++LGGEP YA IA +IA Sbjct: 182 AEASAVAYSRARMLMLLISAIGVVTAVLAAF---WLTRHLLRKLGGEPDYAVQIAGQIAE 238 Query: 233 GDLSCDVQTKPGDDASLLFAIKSMRDSLSSIVSQVREGTQTIEQASSEIASGNLDLSART 292 GDL+ + T+ GD SL+ A++ MRD L++IV++VR+G++TI ASSEIA GNLDLS RT Sbjct: 239 GDLAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRT 298 Query: 293 EQQAGSLEETASAMEQITSTVKQNADNARQANQLAVSASDVAIQGGEVVGQVVTTMAGIN 352 EQQAG+LEETAS+MEQ+ STVKQNA+NA QAN LA++ASDVA+QGG +V QVV TM IN Sbjct: 299 EQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSIN 358 Query: 353 DSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASQ 399 SS+K+ DI+SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS+ Sbjct: 359 ASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 405 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.131 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,024,930 Number of extensions: 34454 Number of successful extensions: 359 Number of sequences better than 1.0e-08: 68 Number of HSP's gapped: 311 Number of HSP's successfully gapped: 69 Length of query: 451 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 363 Effective length of database: 1,203,190 Effective search space: 436757970 Effective search space used: 436757970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)