BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0165.0027.p
         (251 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312792|ref|YP_003776884.1| short-chain alcohol dehydrogena...    62   3e-11
gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum s...    55   5e-09
gi|300312738|ref|YP_003776830.1| short chain dehydrogenase [Herb...    55   7e-09

>gi|300312792|ref|YP_003776884.1| short-chain alcohol dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score = 62.4 bits (150), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 83/182 (45%), Gaps = 11/182 (6%)

Query: 3   LNSKNVVVTGGSRGLGLGLVEALVAQGAKVTVVARGADALESVRTRL--GVATIPADVTD 60
              K VVVTGGS G+GL   +   A+GA+V V  R AD LE     +  G   +P D   
Sbjct: 7   FEDKVVVVTGGSEGIGLATAKLFAAEGARVYVSGRRADKLEQAVREIGNGAVGVPGDAAK 66

Query: 61  ETAAHRILGEV-----RPDILVLNAGAQPRMAR-LDQVSWADFTVAWDTDVKAGLYWLQA 114
                R+   V     R D+L  NAG     A+ L  +   DF   ++ +V+  L+ +Q 
Sbjct: 67  LDDLDRLYARVQADHGRLDVLFANAGTASTEAKPLGMIGEEDFDGLFNLNVRGLLFSVQK 126

Query: 115 ALNLPLKPGSRVLTVSSGAAVNGSPLSGGYAGAKRMLWTMARYANGVSEKKNLGIGFQAI 174
           AL L  + G+ VL   S A V G P    Y  +K  + + AR  +  ++ K  GI    +
Sbjct: 127 ALPLMSQGGAIVLN-GSVAGVKGFPGQSLYNASKAAVRSFAR--SWTADLKERGIRVNVV 183

Query: 175 VP 176
            P
Sbjct: 184 AP 185


>gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 249

 Score = 55.1 bits (131), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 15/169 (8%)

Query: 1   MNLNSKNVVVTGGS--RGLGLGLVEALVAQGAKVTVVARGADALESVRTRLGVATI--PA 56
           M L  K  V+TGG+   GLG      +  QGA+V V+        +   R+G   +   A
Sbjct: 1   MLLKDKVAVITGGAGINGLGYATARLMAEQGARVVVLDLAQADPAAAAARIGSQHLGLVA 60

Query: 57  DVTD----ETAAHRILGEV-RPDILVLNAG-AQPRMARLDQVSWADFTVAWDTDVKAGLY 110
           DVTD    ETAA  IL +  R DILV NAG  QP   +  +++ AD+    D  ++  LY
Sbjct: 61  DVTDKASCETAAAAILQQFGRIDILVNNAGITQP--VKTLEITGADYDRILDVSLRGTLY 118

Query: 111 WLQAAL-NLPLKPGSRVLTVSSGAAVNGSPLSGG--YAGAKRMLWTMAR 156
             QA L  +  +    ++ +SS +A  G  + GG  Y+ AK  +  +AR
Sbjct: 119 MSQAVLPAMRAQQNGSIICISSVSAQRGGGILGGPHYSAAKAGVLGLAR 167


>gi|300312738|ref|YP_003776830.1| short chain dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score = 54.7 bits (130), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 16/166 (9%)

Query: 1   MNLNSKNVVVTGGSRGLGLGLVEALVAQGAKVTVVARGADALESVRTRLGVATIP---AD 57
           +NL  + V+VT G++G+GL +  A V  GA V +     D L S R R G A +     D
Sbjct: 3   LNLKDQKVIVTAGAQGIGLAITAAFVEAGAHVHICDVSEDFLASARARFGHAPVSYSRTD 62

Query: 58  VTDETAAHRILGEV------RPDILVLNAGAQPRMARLDQVSWADFTVAWDTDVKAGLYW 111
           V+ E     +  ++      R D+L+ NAG     + +++V+ +D+      ++      
Sbjct: 63  VSSEREVDAMFADLAQRWSGRLDVLINNAGIAGPTSPVEEVALSDWDQTLAVNLTGPFLC 122

Query: 112 LQAALNLPLKPGSRVLTVSSGAAVNGSPLSGGYAGAKRMLWTMARY 157
            + A+ L  K G        GA VN S ++G    A R  ++ ++Y
Sbjct: 123 TRRAVPLLKKNG-------GGAIVNISSVAGRLGFALRTPYSASKY 161


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 844,753
Number of extensions: 38734
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 5
Length of query: 251
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,226,865
Effective search space: 206113320
Effective search space used: 206113320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)