BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0165.0023.p (171 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312334|ref|YP_003776426.1| transcription regulator protein... 89 2e-19 gi|300313769|ref|YP_003777861.1| transcription regulator protein... 88 3e-19 gi|300309660|ref|YP_003773752.1| LysR family transcription regul... 86 1e-18 gi|300311929|ref|YP_003776021.1| LysR family transcription regul... 86 1e-18 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 82 3e-17 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 89.0 bits (219), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 84/160 (52%), Gaps = 2/160 (1%) Query: 2 IVDVLADGFDLAIRIGSIADSTSLVARKIGRQQMAIFASPAYLAANGRPSSVADLRQHTG 61 I DV+ +G D+AIRI ++ DS +LV+ K+ I A+PAYL +G P S +L +H Sbjct: 131 IADVIGEGIDVAIRIATLTDS-NLVSVKLAENHRVIVAAPAYLRRHGTPQSPDELMRHNC 189 Query: 62 ILYGRTPQARIWRVRDVDGSSQEVLLHGRERYDDLQVVADSAVQGGGLAWLPRWLGAPHV 121 + R W +R G + G +D +V+ + A+ G GLAW W + Sbjct: 190 LAMSSEGSQRGWTLRQ-SGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWRSMWEVGAAI 248 Query: 122 AAGELELVMDMDRVLSVDIHAVWPQNKYLPLRTRTLIDAL 161 AGEL V+D + I+AV+ Q ++LPLR R +D L Sbjct: 249 EAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFL 288 >gi|300313769|ref|YP_003777861.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 88.2 bits (217), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 90/170 (52%), Gaps = 1/170 (0%) Query: 3 VDVLADGFDLAIRIGSIADSTSLVARKIGRQQMAIFASPAYLAANGRPSSVADLR-QHTG 61 VDV+ +GFD+A+R+ S + +SLV R G Q + ASPAY+ A+G +V L+ Q Sbjct: 132 VDVIGEGFDVAMRVRSTLEDSSLVVRTFGTSQQVLAASPAYVRAHGPFDTVQSLQGQRGL 191 Query: 62 ILYGRTPQARIWRVRDVDGSSQEVLLHGRERYDDLQVVADSAVQGGGLAWLPRWLGAPHV 121 G QA+ WR++ DG E+ DD+Q+V +A+ G GLA LP + + Sbjct: 192 GPGGLPGQAQRWRLQGPDGEVAEIDYAPAMVTDDMQLVMQTAIGGVGLALLPFNVAHGAI 251 Query: 122 AAGELELVMDMDRVLSVDIHAVWPQNKYLPLRTRTLIDALTAEVPILMGE 171 A GEL +V+ R +HAV+P + L R I+ L E+ M + Sbjct: 252 ARGELVVVLPQYRGAPHQLHAVFPSRRGLVPAVRAFIEFLAVELSQTMQQ 301 >gi|300309660|ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 86.3 bits (212), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 7/170 (4%) Query: 3 VDVLADGFDLAIRIGSIADSTSLVARKIGRQQMAIFASPAYLAANGRPSSVADLRQHTGI 62 VD++ + D IRIG + DS S+VAR+IG Q A+PAYL +G P ++ DL+QH + Sbjct: 132 VDLVQEAVDCVIRIGELQDS-SMVARRIGTFQTVTCAAPAYLERHGVPHTIEDLQQHKAV 190 Query: 63 LY--GRTPQARIWRVRDVDGSSQEVLLHGRERYDDLQVVADSAVQGGGLAWLPRWLGAPH 120 Y RT + W V+G ++EV ++G+ ++ + A+QG G+ P ++ H Sbjct: 191 HYFSSRTGRTIDWDFV-VEGVTREVKMNGKLAVNEADAYVECALQGFGMVQAPLYMVTRH 249 Query: 121 VAAGELELVMDMDRVLSVDIHAVWPQNKYLPLRTRTLID---ALTAEVPI 167 + G L V+ + + I V+ N++L + R +D L A P+ Sbjct: 250 IDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWVAELFATCPL 299 >gi|300311929|ref|YP_003776021.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 86.3 bits (212), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 4/167 (2%) Query: 2 IVDVLADGFDLAIRIGSIADSTSLVARKIGRQQMAIFASPAYLAANGRPSSVADLRQHTG 61 +VD + +G+DLAIR+G DS L+A + + +FA+PAYLA G+P S+A+L QH Sbjct: 136 VVDFVEEGYDLAIRLGVPPDS-RLIAHTLEEATLGLFAAPAYLARRGQPRSIAELEQHDC 194 Query: 62 ILY--GRTPQARIWRVRDVDGSSQEVLLHGRER-YDDLQVVADSAVQGGGLAWLPRWLGA 118 I + + +A W +D G + R+R +DD+ + A+ GGGL + ++ Sbjct: 195 IQFILPSSGRAMPWIFKDAQGRDMDFHFKSRQRIHDDVLGCVNWAIAGGGLFQIYHFIAD 254 Query: 119 PHVAAGELELVMDMDRVLSVDIHAVWPQNKYLPLRTRTLIDALTAEV 165 V GEL V+ + ++P N++L R R ++ L V Sbjct: 255 AAVRRGELVEVLQQAGYRTRRFSILYPHNRHLSARVRAFVEFLRQAV 301 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 82.0 bits (201), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 2/161 (1%) Query: 2 IVDVLADGFDLAIRIGSIADSTSLVARKIGRQQMAIFASPAYLAANGRPSSVADLRQHTG 61 IVD++ +G+D+AIRI ++DST LV RK+ + + ASPAYL A+G P+ +L QH Sbjct: 131 IVDIIDEGYDMAIRIARLSDST-LVHRKLTSTSLHVCASPAYLDAHGTPAHPHELAQHQT 189 Query: 62 ILYGRTPQARIWRVRDVDGSSQEVLLHGRERYDDLQVVADSAVQGGGLAWLPRWLGAPHV 121 I Y W+ +G V + R ++ +A+ G G+ P ++ ++ Sbjct: 190 ISYSYNQSKDEWQFNGPEGPVS-VRVSSRLHVNNGDSCVQAALGGIGITRQPTFMIDQYL 248 Query: 122 AAGELELVMDMDRVLSVDIHAVWPQNKYLPLRTRTLIDALT 162 +G+L ++ + I+AV+P +LP + R ++D LT Sbjct: 249 RSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLT 289 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 586,416 Number of extensions: 25470 Number of successful extensions: 140 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 19 Length of query: 171 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 92 Effective length of database: 1,245,805 Effective search space: 114614060 Effective search space used: 114614060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)