BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0165.0021.p
         (310 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309908|ref|YP_003774000.1| Zn-dependent hydrolase [Herbasp...   228   5e-61
gi|300312891|ref|YP_003776983.1| Zn-dependent beta-lactamase dom...   166   3e-42

>gi|300309908|ref|YP_003774000.1| Zn-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 331

 Score =  228 bits (581), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 120/295 (40%), Positives = 162/295 (54%), Gaps = 10/295 (3%)

Query: 20  QAPGFYRLMLGQFEITALHDGTIDLEPGKLLTNTTPQKIRKALDATFQGPVVPA----SV 75
           Q PG YR+++G F++T L DGT  +   +++        + AL A F+    P     S+
Sbjct: 40  QTPGIYRVLVGDFKVTVLTDGTTPVPFDQIMHGMD----KHALTAQFRDAGEPVNRETSI 95

Query: 76  NGFLINTGDKLILIDSGTGPSGVFGPSLGQLLKNLTASGYRPEQVDEIYLTHLHPDHVGG 135
           N FLI+TG++ ILIDSG G   VFG   G L++ L  +GY P  +D + LTH+H DH  G
Sbjct: 96  NAFLIDTGERRILIDSGAGK--VFGSCCGHLVETLKIAGYDPASIDAVLLTHVHGDHSAG 153

Query: 136 LLTPSGEAFPNAVIRLDRRELSYWTDSEQAKKAPEGHRSFFPFAEAALKPYKEAGRLKPF 195
           L       FPNA + L + EL YW       +A   H+  F    AAL PY  AGR++ F
Sbjct: 154 LARDGERQFPNADVFLAKSELDYWMSDSAKAQAKASHQQMFVEGRAALAPYLAAGRIRTF 213

Query: 196 DGNVELTPGIHAISAAGHTLGHTVYKVESEGQRMLVWGDVMHVGAIQFAQPQVTIVFDTD 255
            G   L PGI AI A GHT GH+ Y +ES G+RM V GD++H   +Q   P VT+ FD D
Sbjct: 214 SGRTTLFPGIEAIPAPGHTPGHSFYDIESRGRRMRVVGDIIHAAEVQLPHPNVTVDFDAD 273

Query: 256 SPMAAKARAKIFAEAAADRAIVAAAHQPFPGLGHLLRTRTGYQFVPYPFSGVKQN 310
              AA+ R       A    +VA  H  FPGLGH+LR   G+ + P P+S V ++
Sbjct: 274 EAQAARTRIAALEALAQSHELVAGPHLSFPGLGHILRAGDGFAWAPIPYSAVVRD 328


>gi|300312891|ref|YP_003776983.1| Zn-dependent beta-lactamase domain
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 276

 Score =  166 bits (419), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 95/273 (34%), Positives = 146/273 (53%), Gaps = 8/273 (2%)

Query: 29  LGQFEITALHDGTIDLEPGKLLTNTTPQKIRKALDATFQGPVVPASVNGFLINTGDKLIL 88
           +G F +TA+ DG +   P +LL+N  P +  +   A          +N +LI +  + +L
Sbjct: 8   IGDFSVTAISDGFLS-APLELLSNIDPAEATRLQHAAGMSDPSAIHINCYLIRSPTQTVL 66

Query: 89  IDSGTGPSGVFGPSLGQLLKNLTASGYRPEQVDEIYLTHLHPDHVGGLLTPSGE-AFPNA 147
           +D+G G    +G   G+L  NL  +G  P  +D + LTH HPDH+GGLL  +G+ AFP+A
Sbjct: 67  VDAGAGGFKQWG---GRLQDNLKRAGVLPSDIDTVLLTHAHPDHIGGLLDSAGDRAFPDA 123

Query: 148 VIRLDRRELSYWTDSEQAKKAPEGHRSFFPFAEAALKPYKEAGRLKPFDGNVELTPGIHA 207
            + +  +EL +W +     +A E  R  F FA      Y++  RL+ F G  E+ PGI A
Sbjct: 124 ELVVQGQELDFWENDANFCRASERARGNFIFARRVFVKYRD--RLRTFAGG-EVLPGISA 180

Query: 208 ISAAGHTLGHTVYKVESEGQRMLVWGDVMHVGAIQFAQPQVTIVFDTDSPMAAKARAKIF 267
               GHT GH  Y + S GQ +L+WGD++H   +Q A+P V+I FD D  +A   R  + 
Sbjct: 181 QLLPGHTDGHCGYHINSNGQGLLIWGDIVHFPHLQIARPDVSIAFDLDPHLATATRVHLL 240

Query: 268 AEAAADRAIVAAAHQPFPGLGHLLRTRTGYQFV 300
              +AD+ ++A  H    G   ++RT   Y+ V
Sbjct: 241 DMVSADQLLIAGMHLGEEGFVQIVRTGKSYRVV 273


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 976,317
Number of extensions: 41159
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 2
Length of query: 310
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,217,395
Effective search space: 273913875
Effective search space used: 273913875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)