BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0165.0017.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310297|ref|YP_003774389.1| alcohol dehydrogenase [Herbaspi...    90   1e-19
gi|300313771|ref|YP_003777863.1| Zn-dependent alcohol dehydrogen...    86   2e-18

>gi|300310297|ref|YP_003774389.1| alcohol dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 341

 Score = 90.1 bits (222), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 74/150 (49%), Gaps = 4/150 (2%)

Query: 16  LEITEKNVPVPGANEVLIAVEACGICGADIGDIEG---TGVQPGRVPGHEVVGRIAALGH 72
           L I +  VP P   ++L+  EA G+C  D+    G       P  +PGHE  G +AA+G 
Sbjct: 17  LSIEQVPVPTPAPGQILVKFEASGVCHTDLHAAHGDWPVKPTPPFIPGHEGTGYVAAVGA 76

Query: 73  GVSPRWKLGQRVGAGRLGGHCNECDQCRQGRFQLCRNQDFMGATRDGGYAEMMLVKDTGL 132
           GV    K G RVG   L   C  C  CR G   LC  Q   G + +G +AE  L     +
Sbjct: 77  GVK-HVKEGDRVGVPWLHTACGCCSPCRTGWETLCAEQQNTGYSVNGSFAEYGLADPKFV 135

Query: 133 VSVPDDLQAEEAAPILCAGIATFNALKKXK 162
             +PD+L    AAP+LCAG+  +  LK+ +
Sbjct: 136 GHLPDNLDFGPAAPVLCAGVTVYKGLKETE 165


>gi|300313771|ref|YP_003777863.1| Zn-dependent alcohol dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score = 85.9 bits (211), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/147 (38%), Positives = 85/147 (57%), Gaps = 16/147 (10%)

Query: 27  GANEVLIAVEACGICGADIGDI--EGTGVQPGRVPGHEVVGRIAALGHGVSPRWKLGQRV 84
           GA++V I +  CGIC +D+  I  E  G Q   VPGHE+VGR+AA+G  VS ++K+G  V
Sbjct: 26  GAHDVQIDIAYCGICHSDLHQIRSEWAGTQYPCVPGHEIVGRVAAVGAHVS-KFKVGDVV 84

Query: 85  GAGRLGGHCNECDQCRQGRFQLCRNQ--DFMGATRD------GGYAEMMLVKDTGLVSV- 135
           G G +   C  C  C +G    C N    + G T D      GGY++ ++V +  ++++ 
Sbjct: 85  GVGCIVDSCQSCPDCDEGLENYCDNMVGTYNGKTDDAPGWTMGGYSQQIVVHERYVLNIR 144

Query: 136 -PD-DLQAEEAAPILCAGIATFNALKK 160
            P+ DL A   AP+LCAGI T++ L+ 
Sbjct: 145 HPEADLAA--VAPLLCAGITTYSPLRH 169


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 724,749
Number of extensions: 32306
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 2
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)