BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0165.0006.p (263 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313630|ref|YP_003777722.1| LysR family transcription regul... 174 6e-45 gi|300312018|ref|YP_003776110.1| transcription regulator protein... 137 1e-33 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 122 2e-29 gi|300313065|ref|YP_003777157.1| LysR family transcription regul... 117 9e-28 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 116 2e-27 >gi|300313630|ref|YP_003777722.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 174 bits (441), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 106/236 (44%), Positives = 141/236 (59%), Gaps = 2/236 (0%) Query: 1 MRVLEDRLGLRLLNRTTRSVTPTEAGELLLARLSPALQDVAEALTALAAMQEQTSGTLRL 60 +R LEDR+G RLLNRTTRSV P+ GELL R++P +++A A+ + Q SG LR+ Sbjct: 39 IRQLEDRIGARLLNRTTRSVAPSANGELLYRRVAPLFREMAAAVAQASEATGQMSGRLRI 98 Query: 61 NMPRPAARLAVGPLLSRFITAHPRIQVEIVTDDGLSDIVGAGFDAGIRFGERLAGDMVAL 120 N AAR + P L+RF AHP + ++IV DD L+DIV FDAGIR G R+ DMVA+ Sbjct: 99 NTLGIAARTIIAPRLARFHQAHPDVVLDIVVDDTLTDIVAGRFDAGIRVGNRVEKDMVAI 158 Query: 121 PIGPPQAFVMVASPSYLAQHGTPREPADLLSHACIGRRFP-SGTRYAWELSGKGLPLTLS 179 + P V VASP YLA+ G PR P DL H CI R G Y WE +G L ++ Sbjct: 159 RLTPDLNMVAVASPDYLARRGVPRSPKDLHDHTCINWRLQMDGRHYRWEFKKRGQQLEVA 218 Query: 180 VNGALVLDDDALMIQAARDGLGVAYVYETMAL-DALACGDLVTVLPAWNAPAARLF 234 V+G ++ + + I AA GLG+AY +E + + L+ G LV VL W+ LF Sbjct: 219 VDGPIITNHADIGIAAALGGLGIAYHFERDGVSELLSQGRLVQVLADWSISRPGLF 274 >gi|300312018|ref|YP_003776110.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 137 bits (344), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/262 (33%), Positives = 135/262 (51%), Gaps = 7/262 (2%) Query: 1 MRVLEDRLGLRLLNRTTRSVTPTEAGELLLARLSPALQDVAEALTALAAMQEQTSGTLRL 60 M+ LE+RL +LL R++R+++PT AG L ARL + + AL+ L + + G LR+ Sbjct: 42 MKRLEERLATQLLYRSSRAISPTAAGSELAARLEQGFEQIGAALSQLDSSAAGSLGELRI 101 Query: 61 NMPRPAARLAVGPLLSRFITAHPRIQVEIVTDDGLSDIVGAGFDAGIRFGERLAGDMVAL 120 N+ AA L + P + F+ P++++ IV DD DIV G+DAGIR+G + MV Sbjct: 102 NVFADAAHLLIEPAIPEFVRQCPKVRLTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTA 161 Query: 121 PIGPPQAFVMVASPSYLAQHGTPREPADLLSHACIGRRFPSGTRYAWELSGKGLPLTLSV 180 P+ +V A+P+YL +HG P DL H C+ + Y WE + V Sbjct: 162 PLTRAHRWVAAAAPAYLDRHGRPLTLQDLQQHTCLQLLLGDNSSYQWEFGRGKHRQRIRV 221 Query: 181 NGALVLDDDALMIQAARDGLGVAYVYETMALDALACGDLVTVLPAWNAPAA--RLFQSPA 238 G + +++ A I AA+ G+G+AY+ E + G L T+L W AP+ ++ S Sbjct: 222 PGLVTINNTAATIAAAKAGVGIAYLLEGRISKEIEEGSLETILEEWAAPSEPFHMYYSSR 281 Query: 239 SLAGICGFHPRLNRSISVCCLD 260 A HP L + I + L Sbjct: 282 RHA-----HPALRKLIDIIRLQ 298 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 122 bits (307), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 6/233 (2%) Query: 4 LEDRLGLRLLNRTTRSVTPTEAGELLLARLSPALQDVAEALTALAAMQEQTSGTLRLNMP 63 LE+RLG++LL RTTR + T G L L D+ +A +A++ + SG L ++ P Sbjct: 40 LEERLGVKLLQRTTRKIVLTNEGAAFLEDCQRILADLEDAESAVSERSARASGQLLISAP 99 Query: 64 RPAARLAVGPLLSRFITAHPRIQVEIVTDDGLSDIVGAGFDAGIRFGERLAGDMVALPIG 123 R V PLL F+ H + + + +D ++D++G G D IR ++V++ + Sbjct: 100 AGFGRQHVAPLLPSFLAEHRDVTLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLA 159 Query: 124 PPQAFVMVASPSYLAQHGTPREPADLLSHACIGRRFPSGTRYAWELSGKGLPLTLSVNGA 183 V+VA+P+YL +HGTP+ P +L+ H C+ G++ W L G V G Sbjct: 160 ENHR-VIVAAPAYLRRHGTPQSPDELMRHNCLAMS-SEGSQRGWTLRQSGKVSVYKVGGN 217 Query: 184 LVLDDDALMIQAARDGLGVAY--VYETMALDALACGDLVTVLPAWNAPAARLF 234 +V +D ++ A G G+A+ ++E A A+ G+LVTVL + APA ++ Sbjct: 218 MVCNDGEVLHNWALAGRGLAWRSMWEVGA--AIEAGELVTVLDKFAAPAPSIY 268 >gi|300313065|ref|YP_003777157.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 117 bits (293), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 104/227 (45%) Query: 1 MRVLEDRLGLRLLNRTTRSVTPTEAGELLLARLSPALQDVAEALTALAAMQEQTSGTLRL 60 M+ LE LG RLL R+TRS+ T GE L L +V A+A + G L L Sbjct: 37 MKRLEGELGARLLARSTRSLRLTPDGERYLQHARNVLAEVNAGRDAVAHGRRVIGGNLSL 96 Query: 61 NMPRPAARLAVGPLLSRFITAHPRIQVEIVTDDGLSDIVGAGFDAGIRFGERLAGDMVAL 120 + P R +G L F HP + +++ D ++D+ D IR+ +VAL Sbjct: 97 SAPSDFGRNLIGQWLDEFQAQHPAVSLQVHVSDRVADMYRQPVDVAIRYSAPDDSSLVAL 156 Query: 121 PIGPPQAFVMVASPSYLAQHGTPREPADLLSHACIGRRFPSGTRYAWELSGKGLPLTLSV 180 P+ P V+ ASP YLA+HG PR PADL H C+ W P+ + V Sbjct: 157 PLAPDNRRVLCASPDYLARHGRPRSPADLRQHNCLRYVLSDTLHSQWNFFKDDEPVQVQV 216 Query: 181 NGALVLDDDALMIQAARDGLGVAYVYETMALDALACGDLVTVLPAWN 227 +G DD L+ + A +G G+AY L L G L +L + Sbjct: 217 SGDRTCDDGELVRRWAVNGRGIAYKSRLDVLADLRNGRLEALLEDYE 263 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 116 bits (291), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 2/231 (0%) Query: 4 LEDRLGLRLLNRTTRSVTPTEAGELLLARLSPALQDVAEALTALAAMQEQTSGTLRLNMP 63 LE RLG RL+ RTTR ++ TEAG L L R + + EA L++ + +G LR+N P Sbjct: 40 LEARLGSRLMQRTTRRLSLTEAGALYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAP 99 Query: 64 RPAARLAVGPLLSRFITAHPRIQVEIVTDDGLSDIVGAGFDAGIRFGERLAGDMVALPIG 123 L + PL F+ HP I ++I D + DI+ G+D IR RL+ + Sbjct: 100 LTFGVLHLAPLWPMFLERHPEISLDITLSDRIVDIIDEGYDMAIRIA-RLSDSTLVHRKL 158 Query: 124 PPQAFVMVASPSYLAQHGTPREPADLLSHACIGRRFPSGTRYAWELSGKGLPLTLSVNGA 183 + + ASP+YL HGTP P +L H I + + ++ W+ +G P+++ V+ Sbjct: 159 TSTSLHVCASPAYLDAHGTPAHPHELAQHQTISYSY-NQSKDEWQFNGPEGPVSVRVSSR 217 Query: 184 LVLDDDALMIQAARDGLGVAYVYETMALDALACGDLVTVLPAWNAPAARLF 234 L +++ +QAA G+G+ M L G LV++L + AP ++ Sbjct: 218 LHVNNGDSCVQAALGGIGITRQPTFMIDQYLRSGQLVSILGDYGAPELGIY 268 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 879,346 Number of extensions: 40996 Number of successful extensions: 269 Number of sequences better than 1.0e-08: 36 Number of HSP's gapped: 230 Number of HSP's successfully gapped: 36 Length of query: 263 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 180 Effective length of database: 1,226,865 Effective search space: 220835700 Effective search space used: 220835700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)