BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0164.0005.p (391 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum serop... 658 0.0 gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [He... 343 2e-95 gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspir... 88 1e-18 gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desucc... 87 2e-18 >gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum seropedicae SmR1] Length = 395 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 304/390 (77%), Positives = 340/390 (87%) Query: 2 MNTRQWLEQLVAFDTTSRNSNLELITSVRDSLQAQGITPWFAHNKERTKANLFATLPATE 61 MNTRQWLE LVAFDTTSRNSNLELIT+VRDSLQ QG+ W AHNK++TKANLFATLPAT Sbjct: 6 MNTRQWLETLVAFDTTSRNSNLELITTVRDSLQQQGVASWLAHNKDKTKANLFATLPATA 65 Query: 62 GPEAGTIQGGIVLSGHTDVVPVDGQKWDSDPFTLTERDGLLYGRGSCDMKGYIAASLALV 121 GP AG+ +GGIVLSGHTDVVPVDGQKWD+DPF LTE+DG LY RGSCDMKG+IA +LALV Sbjct: 66 GPHAGSTEGGIVLSGHTDVVPVDGQKWDTDPFKLTEKDGALYARGSCDMKGFIATALALV 125 Query: 122 PEFLAMSRSKPLHLAFSYDEEIGCAGAPSMLAELQERGIRPDSCVVGEPTNMQVVVAHKG 181 PE+LAM R KP+HLAFS+DEEIGC GAP ML E+ +RGI+ D CVVGEPT+M VVVAHKG Sbjct: 126 PEYLAMPRVKPIHLAFSFDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVVVAHKG 185 Query: 182 INAFTCRVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADAYKVNGPYDTLYDVPFSTMT 241 IN F C+VHGKSAHSSLTPQGCNAIEHAARLICAIRDFAD YK NGPYD +DVPFSTMT Sbjct: 186 INVFACKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVPFSTMT 245 Query: 242 TNQIRGGIAINTIPDLCEFTYEFRNLPGMSPDKIQSQVTQYVRDQLLPKMQAEYPDAKVD 301 TNQIRGGIA+NTIP+LCEFTYEFRNLPGMS IQ+Q+ +Y+ + LLPKM+ E+PDA+V+ Sbjct: 246 TNQIRGGIAVNTIPELCEFTYEFRNLPGMSVADIQAQIDKYIAEVLLPKMRTEFPDARVE 305 Query: 302 IGIIAASPALETAEQEAITALVRALTEDNEKRKVAYATEAGLFQQIGIPTIVCGPGDIIQ 361 I A SPALE EQ AIT LVRALT D + RKVAY TEAGLFQQIGIPTIVCGPGDI Sbjct: 306 IDNFAGSPALEAVEQAAITELVRALTGDRQTRKVAYGTEAGLFQQIGIPTIVCGPGDIGN 365 Query: 362 AHKPNEFVAIAQLQRCEEFLRKLGRSLQAA 391 AHKPNEFV +AQ++ CE+FLRKLG+SLQAA Sbjct: 366 AHKPNEFVTLAQMEHCEQFLRKLGKSLQAA 395 >gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 343 bits (880), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 175/382 (45%), Positives = 236/382 (61%), Gaps = 10/382 (2%) Query: 4 TRQWLE---QLVAFDTTSRNSNLELITSVRDSLQAQGITPWFAHNKERTKANLFATLPAT 60 TRQ L+ L+ F+T SR SNL LI VRD L+ G ++ ER KANLFATL Sbjct: 13 TRQTLDILTTLIGFNTVSRESNLGLIEWVRDHLERHGAVTRLTYDAERRKANLFATLG-- 70 Query: 61 EGPEAGTIQGGIVLSGHTDVVPVDGQKWDSDPFTLTERDGLLYGRGSCDMKGYIAASLAL 120 +AG + G V SGHTDVVPV GQKWD+DPF DG L+GRG+CDMKG+IA +A Sbjct: 71 ---DAGPGRFGTVFSGHTDVVPVTGQKWDTDPFVAHVADGKLFGRGACDMKGFIAICMAR 127 Query: 121 VPEFLAMSRSKPLHLAFSYDEEIGCAGAPSMLAELQERGIRPDSCVVGEPTNMQVVVAHK 180 +P PLH +FSYDEE+GC G +LA+LQ+ IRP ++GEPT MQ V+AHK Sbjct: 128 LPAIDLARLHTPLHFSFSYDEEVGCLGVRELLADLQQNDIRPTGVIIGEPTMMQPVIAHK 187 Query: 181 GINAFTCRVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADAYKVNGPYDTLYDVPFSTM 240 G ++ C VHG +AHSS G N+I+ AA + IR+ A + +G D +DVP+S++ Sbjct: 188 GKRSYRCSVHGHAAHSSCPHLGINSIDFAAMMQLKIREIALRVRHSGVQDDDFDVPYSSI 247 Query: 241 TTNQIRGGIAINTIPDLCEFTYEFRNLPGMSPDKIQSQVTQYVRDQLLPKMQAEYPDAKV 300 T GG A N IPD EF +E R LPG+ P ++ +V Y ++LP+M+ + ++ Sbjct: 248 ATTLTSGGNAPNIIPDKAEFVFEHRFLPGIDPAEVFEEVKAYAEQEILPQMRIDGVQGRI 307 Query: 301 DIGIIAASPALET-AEQEAITALVRALTEDNEKRKVAYATEAGLFQQIGIPTIVCGPGDI 359 + + + P + T A+ +T+ +R L + RKV + TE GLF Q G+P ++CGPGDI Sbjct: 308 EFETLTSYPGMCTPADDPLVTSALRILGSE-RARKVGFGTEGGLFGQAGMPAVICGPGDI 366 Query: 360 IQAHKPNEFVAIAQLQRCEEFL 381 AHKPNEFV + QL RCE F Sbjct: 367 AHAHKPNEFVTLEQLARCERFF 388 >gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspirillum seropedicae SmR1] Length = 414 Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 134/296 (45%), Gaps = 23/296 (7%) Query: 72 IVLSGHTDVVPVDGQKWDSDPFTLTERDGLLYGRGSC----DMKGYIAASLALVPEFLAM 127 + L+ H DVVP G+ W DP+ DG +YGR + D Y+ A+ AL E + Sbjct: 92 LALNAHGDVVP-PGEGWTHDPYGGEIADGRIYGRAAAVSKSDFASYLFATRAL--EAVGA 148 Query: 128 SRSKPLHLAFSYDEEIGCAGAPSMLAELQERGIRPDSCVVGEPTNMQVVVAHKGINAFTC 187 S + L F+YDEE G P L E ++ RPD V+ + VV AH F Sbjct: 149 SLRGGVELHFTYDEEFGGLLGPGWLLE--QKLTRPD-YVLAAGFSYNVVTAHNACLQFEI 205 Query: 188 RVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADAYKVNGPYDTLYDVPFSTMTTNQIRG 247 VHG++ H S+ G +A++ A ++ AI + + + + TM +I G Sbjct: 206 TVHGRATHGSMPETGHDALQAATAILNAI--YGALPGLKEIRSAIPGITHPTMIVGRIDG 263 Query: 248 GIAINTIPDLCEFTYEFRNLPGMSPDKIQSQVTQYVRDQLLPKMQAEYPDAKVDI--GII 305 G N +P + R +P P ++++ V + + D + A P +V+I ++ Sbjct: 264 GTNTNVVPGKVVLKMDRRMIPEEDPSQVEAGVRKLIEDAV-----AGLPGIRVEIRRLLL 318 Query: 306 AASPALETAEQEAITALVR----ALTEDNEKRKVAYATEAGLFQQIGIPTIVCGPG 357 A + ++ + +L+R + E A T+A L+ + GIP ++ G G Sbjct: 319 ARALRPLPGHEKLVESLLRNAREVMGETLTTNGSALYTDARLYGEQGIPVVLFGAG 374 >gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desuccinylase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 98/339 (28%), Positives = 142/339 (41%), Gaps = 32/339 (9%) Query: 66 GTIQGGIVLSGHTDVVPVDG-QKWDSDPFTLTERDGLLYGRGSCDMKGYIAASLALVPEF 124 GT Q +V +GHTDVVP +KW S PF T R+G LYGRG+ DMK IAA + EF Sbjct: 57 GTAQPLVVFAGHTDVVPTGPLEKWQSHPFQPTLREGRLYGRGASDMKTSIAAMVVACEEF 116 Query: 125 LAMSRSKPLHLAF---SYDEEIGCAGAPSMLAELQERGIRPDSCVVGEPTNMQVV----- 176 A + F S +E G + L+ RG + D C+VGEPT+ + + Sbjct: 117 TAAHPDHKGSIGFLITSDEEGPAIDGTVVVCNALKARGEQLDYCIVGEPTSAKTLGDMIK 176 Query: 177 VAHKGINAFTCRVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADAYKVNGPYDTLYDVP 236 +G + V G H + N I AA + + A+ + Y +P Sbjct: 177 NGRRGTMSGKLTVKGIQGHIAYPQLARNPIHQAAPALAEL--VAEQWDAGNE----YYLP 230 Query: 237 FSTMTTNQIRGGIAINTIPDLCEFTYEFRNLPGMSPDKIQSQVTQYVRDQLLPKMQAEYP 296 S +N G A N IP + FR + + +Q +V +L K EY Sbjct: 231 TSWQISNIHGGTGASNVIPGEVMIDFNFRFSTASTVEGLQQRV-----HAILDKHGLEY- 284 Query: 297 DAKVDIGIIAASPALETAEQEAITALVRALTE----DNEKRKVAYATEAGLFQQIGIPTI 352 D K +G + P L T + AL +A+ + D E ++ QI I Sbjct: 285 DLKWTVGGL---PFL-TPRGDLSDALSKAIKDETGLDTELSTTGGTSDGRFIAQICPQVI 340 Query: 353 VCG-PGDIIQAHKPNEFVAIAQLQRCEEFLRKLGRSLQA 390 G P D I HK +E + + + + RK +L A Sbjct: 341 EFGPPNDSI--HKIDEHIEVRYIDPLKNIYRKTLENLLA 377 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,206,267 Number of extensions: 49710 Number of successful extensions: 146 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 4 Length of query: 391 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 304 Effective length of database: 1,207,925 Effective search space: 367209200 Effective search space used: 367209200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)