BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0164.0004.p
         (191 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312086|ref|YP_003776178.1| Mg-dependent DNase [Herbaspiril...   271   2e-74
gi|300311908|ref|YP_003776000.1| Mg-dependent DNase [Herbaspiril...    86   2e-18

>gi|300312086|ref|YP_003776178.1| Mg-dependent DNase [Herbaspirillum
           seropedicae SmR1]
          Length = 268

 Score =  271 bits (694), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 146/187 (78%), Positives = 163/187 (87%)

Query: 4   LRHAIEAALRDRRFVAIGEIGLDFFVPALKEPAMRDKQEHFYSEQLKLAREFDLPVLLHV 63
           LR AI AAL D  FV IGEIGLDFFVPALKEP +R+KQE F++EQLKLAR+F LPVLLHV
Sbjct: 78  LREAIAAALDDPLFVGIGEIGLDFFVPALKEPPLREKQEFFFAEQLKLARDFALPVLLHV 137

Query: 64  RRSQDIILKYLRRIAVPGGIAHAFNGSFQQAETFVGLGFKLGLGGAMTFPRSLQIRRLAA 123
           RRSQDIILK+LRRI VPGGIAHAFNGS QQA TFV LG  LG GGAMTFPR+LQIRRLAA
Sbjct: 138 RRSQDIILKHLRRIRVPGGIAHAFNGSDQQARTFVELGLHLGFGGAMTFPRALQIRRLAA 197

Query: 124 EVPLDAVVLETDAPDISPAWLHPQRNTPDQIPRIGQVLAELRGMDIADVAAATSANAHAV 183
           E+PL ++VLETDAPDI+PAW HP+ NTPDQIPRIGQVLAELRG+   +VAAAT+ANA A 
Sbjct: 198 ELPLSSIVLETDAPDIAPAWRHPEINTPDQIPRIGQVLAELRGLPQQEVAAATTANARAA 257

Query: 184 LPRLAAA 190
           LPRLA++
Sbjct: 258 LPRLASS 264


>gi|300311908|ref|YP_003776000.1| Mg-dependent DNase [Herbaspirillum
           seropedicae SmR1]
          Length = 259

 Score = 85.9 bits (211), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 89/170 (52%), Gaps = 10/170 (5%)

Query: 16  RFVAIGEIGLDFFVPALKEPAMRDKQEHFYSEQLKLAREFDLPVLLHVRRSQDIILKYLR 75
           R VAIGE GLD++    +     + Q   +   ++ +R    P+++H R + +  ++ LR
Sbjct: 85  RIVAIGETGLDYY----RLQGDLEWQRERFRTHIRASRATGKPLIIHTRAASEDTIRILR 140

Query: 76  RIAVP------GGIAHAFNGSFQQAETFVGLGFKLGLGGAMTFPRSLQIRRLAAEVPLDA 129
                       G+ H F  S + A+  + LGF +   G +TF  +  ++++A  +PL+ 
Sbjct: 141 EEGASPQAGGAAGVMHCFTESQEVADAAIELGFYISFSGIVTFKSAKDLQQVARAIPLER 200

Query: 130 VVLETDAPDISPAWLHPQRNTPDQIPRIGQVLAELRGMDIADVAAATSAN 179
           +++ETD+P ++P     + N P  +  +G+ +A+LRG   A+VA  TS N
Sbjct: 201 MLIETDSPYLAPVPFRGKTNEPGYVRHVGEFIADLRGTSAAEVARQTSEN 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 544,134
Number of extensions: 19992
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 191
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,241,070
Effective search space: 137758770
Effective search space used: 137758770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)