BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0163.0002.p
         (140 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312534|ref|YP_003776626.1| hypothetical protein Hsero_3237...   121   2e-29
gi|300312532|ref|YP_003776624.1| hypothetical protein Hsero_3235...   121   2e-29

>gi|300312534|ref|YP_003776626.1| hypothetical protein Hsero_3237
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  121 bits (304), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/124 (62%), Positives = 93/124 (75%)

Query: 5   ARPGALLGAQRLILLALPVLAIWLASIGFLLLAPPSLRLALVLGSTWQVCSLNIALLSLP 64
           ARPG  +G      L LP   +WLA   +L LAPPS RL L+LGS+W+VCS N+ALLSLP
Sbjct: 81  ARPGMRIGLGPAAALLLPPCVLWLAGGVWLALAPPSQRLELLLGSSWEVCSANVALLSLP 140

Query: 65  TFLSMFWAMRGLAPTRLMLTGASIGLVAGAQGVVVYTLYCTEMAMPFWGVWYVIGMLAPT 124
           T  +M W +RGLAPT+L   GA+ GLVAGAQGV+VY+LYC EMA PFWGVWYV+G+  PT
Sbjct: 141 TLATMLWFLRGLAPTQLRAAGAAAGLVAGAQGVLVYSLYCVEMAPPFWGVWYVLGVALPT 200

Query: 125 AAGA 128
           AAGA
Sbjct: 201 AAGA 204


>gi|300312532|ref|YP_003776624.1| hypothetical protein Hsero_3235
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  121 bits (303), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 85/121 (70%), Gaps = 1/121 (0%)

Query: 6   RPGALLGAQRLILLALPVLAIWLASIGFLLLAPPSLRLALVLGSTWQVCSLNIALLSLPT 65
           RPG  +G  R   +ALP LA+W      LL AP + RL L++G +W+ C  NIALLS+P 
Sbjct: 83  RPGLRVGV-RWAGIALPGLAVWAGGALVLLSAPLAQRLPLLMGISWRSCPFNIALLSIPL 141

Query: 66  FLSMFWAMRGLAPTRLMLTGASIGLVAGAQGVVVYTLYCTEMAMPFWGVWYVIGMLAPTA 125
           F+ +FWA+RG+APTRL LTGA  GL+AGA   +VY L+C EM +PFWGVWY +G+L P A
Sbjct: 142 FIGIFWAVRGMAPTRLRLTGAIAGLLAGATATMVYCLHCPEMGVPFWGVWYFLGILIPAA 201

Query: 126 A 126
           A
Sbjct: 202 A 202


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.141    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 370,917
Number of extensions: 13383
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 2
Length of query: 140
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 64
Effective length of database: 1,260,010
Effective search space: 80640640
Effective search space used: 80640640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)