BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0162.0006.p
         (254 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309748|ref|YP_003773840.1| tyrosyl-tRNA synthetase [Herbas...   447   e-127

>gi|300309748|ref|YP_003773840.1| tyrosyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 453

 Score =  447 bits (1149), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 212/232 (91%), Positives = 222/232 (95%), Gaps = 3/232 (1%)

Query: 1   VVLNKMRQLQDLGHNVIFLIGDFTSMIGDPSGRNATRPPLTREQIEVNAKTYFAQASLVL 60
           VVLNKMRQLQ+LGH VIFLIGDFTSMIGDPSGRNATRPPL+REQIE+NAKTYFAQASLVL
Sbjct: 111 VVLNKMRQLQNLGHQVIFLIGDFTSMIGDPSGRNATRPPLSREQIEINAKTYFAQASLVL 170

Query: 61  DAARTEIRYNSEWCDPLGSRGMIQLASRYTVARMMERDDFTKRFKEGTPISVHEFLYPLM 120
           D ++TEIRYNSEWCD LGSRGMIQLASRYTVARMMERDDFTKRFKEGTPISVHEFLYPLM
Sbjct: 171 DPSKTEIRYNSEWCDALGSRGMIQLASRYTVARMMERDDFTKRFKEGTPISVHEFLYPLM 230

Query: 121 QGYDSVALKSDLELGGTDQKFNLLVGRELQKDFGQEPQCILTMPLLEGLDGVDKMSKSKN 180
           QGYDSVALKSDLELGGTDQKFNLLVGRELQKDFGQEPQCILTMPLLEGLDGV+KMSKSK 
Sbjct: 231 QGYDSVALKSDLELGGTDQKFNLLVGRELQKDFGQEPQCILTMPLLEGLDGVEKMSKSKG 290

Query: 181 NYIGITEPANTMFAKVMSISDVMMWRYYELLSFRSIADIAGFKX---AGHRP 229
           NYIGITEPANTMFAKVMSISDVMMWRYY+LLSFRS+A+IAG+K    AG  P
Sbjct: 291 NYIGITEPANTMFAKVMSISDVMMWRYYDLLSFRSMAEIAGYKAEVDAGKNP 342


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 714,205
Number of extensions: 27440
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,226,865
Effective search space: 209793915
Effective search space used: 209793915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)