BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0162.0004.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309746|ref|YP_003773838.1| anhydro-N-acetylmuramic acid ki...   275   3e-75

>gi|300309746|ref|YP_003773838.1| anhydro-N-acetylmuramic acid
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  275 bits (702), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/229 (63%), Positives = 166/229 (72%), Gaps = 6/229 (2%)

Query: 1   VPAFHQAVFGSDSEMRVAVNIGGISNISILPAGRQAATSGFDTGPGNVLMDAWIARHQGQ 60
           VPAFH+A+FG  ++ RV VNIGGI+NISILPAG++ A  GFDTGPGN LMD WI  HQ +
Sbjct: 152 VPAFHRALFGDAAQSRVVVNIGGIANISILPAGKEEAY-GFDTGPGNALMDGWIHLHQQR 210

Query: 61  SYDADGAWGASGKVDAALLAALRSDAYFALPPPKSTGRDLFHVEWLEQR-LQGFSQLPPA 119
           SYD +G WGASG+V   LL  LR +A+F  PPPKS+GRDLFH++WL+   L+   Q+ PA
Sbjct: 211 SYDINGDWGASGQVHPGLLTQLREEAFFHAPPPKSSGRDLFHLDWLQAALLRTGQQVAPA 270

Query: 120 DVQATLTAFTATTIADAIVAHAPATAALYVCGGGAYNGYLLEQLAQALQASAGRTVPVMS 179
           DVQATL   TA TIADAI  HA     +YVCGGGA N  L+  L Q L+  A     V S
Sbjct: 271 DVQATLAMLTANTIADAIKLHAADAGQVYVCGGGAENALLMRLLGQQLEGRA----EVRS 326

Query: 180 TEVLGVAPNHVEALAFAWLAQRFCLRLPGNLPAVTGARGLRVLGGLYPA 228
           T  LGVAP HVEALAFAWLAQRF  RL GNLPAVTGARG RVLG LYPA
Sbjct: 327 TAALGVAPQHVEALAFAWLAQRFDQRLAGNLPAVTGARGPRVLGALYPA 375


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 720,104
Number of extensions: 26510
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)