BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0161.0003.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311480|ref|YP_003775572.1| chromosome segregation SMC ATPa...   258   5e-70

>gi|300311480|ref|YP_003775572.1| chromosome segregation SMC ATPase
            [Herbaspirillum seropedicae SmR1]
          Length = 1176

 Score =  258 bits (659), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 123/136 (90%), Positives = 129/136 (94%)

Query: 1    MRPSYLQGEVTRLTNAIAALGAVNLAALDELATASERKNFLDAQYVDLNEAITTLQDAIH 60
            MRPSYLQGEVTRLTNAIAALGAVNLAALDELATASERK+FLDAQ+ DLNEAITTLQDAIH
Sbjct: 950  MRPSYLQGEVTRLTNAIAALGAVNLAALDELATASERKHFLDAQHADLNEAITTLQDAIH 1009

Query: 61   KIDIETRGLLQDTFDKVNGHFAELFPILFGGGQARLTMTGDEILDSGVQVMAQPPGKKNA 120
            KID+ETR LLQDTFDKVN HF+ELFP+LFGGGQA+L MTGDEILDSGVQVMAQPPGKKNA
Sbjct: 1010 KIDMETRDLLQDTFDKVNRHFSELFPVLFGGGQAKLIMTGDEILDSGVQVMAQPPGKKNA 1069

Query: 121  TIHLLSGGEKAPWADA 136
            TIHLLSGGEKA  A A
Sbjct: 1070 TIHLLSGGEKALTATA 1085



 Score =  169 bits (428), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 97/121 (80%), Positives = 108/121 (89%)

Query: 130 KAPWADAAMTAATQRLQELRQRVAGLTQAVHSLQIEVMKLSEVQERFNQRSTQIVADLAE 189
           +A  A+AA+ AA+QRLQELRQRV  LTQ+ HSLQIEVMKL+EVQERFNQRSTQI  DL E
Sbjct: 688 RAVRAEAALLAASQRLQELRQRVNSLTQSAHSLQIEVMKLAEVQERFNQRSTQIATDLEE 747

Query: 190 IEMQEVEQQQIKAESEAKFEQLDIELAELQESHENGQTDYLSKEQQLNDARQRLRELERA 249
           I MQE EQQQ++AESEA+FE+LDIELAELQE HENGQTDYL+KEQQLNDAR RLRELERA
Sbjct: 748 ISMQEAEQQQVQAESEARFEELDIELAELQEQHENGQTDYLNKEQQLNDARTRLRELERA 807

Query: 250 A 250
           A
Sbjct: 808 A 808


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 656,256
Number of extensions: 21338
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 2
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)