BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0161.0002.p
         (468 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311480|ref|YP_003775572.1| chromosome segregation SMC ATPa...   526   e-150

>gi|300311480|ref|YP_003775572.1| chromosome segregation SMC ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 1176

 Score =  526 bits (1356), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 267/332 (80%), Positives = 302/332 (90%), Gaps = 1/332 (0%)

Query: 31  SEIGSLEAQIKFVIESRNRLQSQLNSLTAQRDQWQRQGTQHQDDLAEAEIQLEEQGMRVE 90
           SEIGSLEAQIKFVIESRNRLQ+QLNSL AQRDQWQRQGTQ Q++LAEAEIQLEE GMRVE
Sbjct: 298 SEIGSLEAQIKFVIESRNRLQAQLNSLGAQRDQWQRQGTQQQEELAEAEIQLEEFGMRVE 357

Query: 91  QAQQAVQDGNDKVPTLEQAWREAQLKTTESRGKIMQIQQQIELESAHQRNASNILSGLAV 150
           QAQ AVQD +D++P+LE AWRE+Q+KTTESRGKIMQ+QQQIEL+S HQRNASNILSGLA 
Sbjct: 358 QAQHAVQDTSDRLPSLEAAWRESQVKTTESRGKIMQVQQQIELQSTHQRNASNILSGLAA 417

Query: 151 RRERLAQEKSGLNMPDDAHLSNLKLQLEEKQAALEEASMYLEEAQEQQPKLEEERRTAQE 210
           RRERL QEK+G+ MPD+ HLSNL++QLEEKQA+LEEASMYLEEAQEQ P+LEEERRTAQE
Sbjct: 418 RRERLMQEKNGMAMPDEVHLSNLRMQLEEKQASLEEASMYLEEAQEQLPRLEEERRTAQE 477

Query: 211 LVSKETSDLAQLEARQSALKQLQESVQTQGKVQPWLEKHELANLPRLWQKLHIDAGWETS 270
           LVSKETS  AQLEAR +ALKQLQESVQ QGKVQPWLEKH LA LPRLWQKLHI++GWET+
Sbjct: 478 LVSKETSANAQLEARLTALKQLQESVQAQGKVQPWLEKHGLAELPRLWQKLHIESGWETA 537

Query: 271 LESVLRERMSALEVSNLDWAKAFFNDAPPAKLALFAPNPAAAPAEPAP-NGLKPFINLLQ 329
           LE+VLRERMSALE+SNLDWAKAFF+DAPPAKLAL+APN   A  E  P  GLKPF+ LLQ
Sbjct: 538 LEAVLRERMSALEMSNLDWAKAFFSDAPPAKLALYAPNAGLAQPEAQPVAGLKPFVTLLQ 597

Query: 330 LNDPGLRSLMQDWLHNVFIADDTASAFVDRSK 361
           LNDPGLR+LM DWL++++IADDTA+AF +R+K
Sbjct: 598 LNDPGLRALMNDWLNHIYIADDTATAFAERAK 629


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.123    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,087,859
Number of extensions: 35105
Number of successful extensions: 206
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 379
Effective length of database: 1,198,455
Effective search space: 454214445
Effective search space used: 454214445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 132 (55.5 bits)