BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0161.0001.p
         (212 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311480|ref|YP_003775572.1| chromosome segregation SMC ATPa...   114   5e-27

>gi|300311480|ref|YP_003775572.1| chromosome segregation SMC ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 1176

 Score =  114 bits (285), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 81/125 (64%), Gaps = 8/125 (6%)

Query: 2   GVVGPNGCGKSNIIDAVRWVLGESKAS----ELRGESMQDVIFNGSTNRKPAGRAVSREF 57
           G+  P+    SN+    R  L E +AS     +  E  Q+ +      R+ A   VS+E 
Sbjct: 428 GMAMPDEVHLSNL----RMQLEEKQASLEEASMYLEEAQEQLPRLEEERRTAQELVSKET 483

Query: 58  VNVLSLEARQSALKQLQESVQTQGKVQPWLEKHELANLPRLWQKLHIDAGWETSLESVLR 117
                LEAR +ALKQLQESVQ QGKVQPWLEKH LA LPRLWQKLHI++GWET+LE+VLR
Sbjct: 484 SANAQLEARLTALKQLQESVQAQGKVQPWLEKHGLAELPRLWQKLHIESGWETALEAVLR 543

Query: 118 ERMSA 122
           ERMSA
Sbjct: 544 ERMSA 548



 Score =  113 bits (283), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/58 (93%), Positives = 55/58 (94%), Gaps = 1/58 (1%)

Query: 1  VGVVGPNGCGKSNIIDAVRWVLGESKASELRGESMQDVIFNGSTNRKPAGRAVSREFV 58
          VGVVGPNGCGKSNIIDAVRWVLGESKASELRGESMQDVIFNGST+RKPAGRA S E V
Sbjct: 27 VGVVGPNGCGKSNIIDAVRWVLGESKASELRGESMQDVIFNGSTHRKPAGRA-SVELV 83


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 443,664
Number of extensions: 13427
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 2
Length of query: 212
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,236,335
Effective search space: 161959885
Effective search space used: 161959885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)