BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0160.0008.p
         (211 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313974|ref|YP_003778066.1| beta-lactamase [Herbaspirillum ...   264   3e-72

>gi|300313974|ref|YP_003778066.1| beta-lactamase [Herbaspirillum
           seropedicae SmR1]
          Length = 309

 Score =  264 bits (675), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 124/203 (61%), Positives = 157/203 (77%), Gaps = 4/203 (1%)

Query: 8   LPSSVYVLERGWLSSNNVLFLGEQGTALVDTGYVTHAEQTLALVAHVLNERGRAPQLDRV 67
           + +S++VLERGWLSSNNVL  G    A++D+GYVTHAEQT  LV HVL +RGR P+LD +
Sbjct: 8   IAASIHVLERGWLSSNNVLLFGRDEVAMIDSGYVTHAEQTRTLVRHVLAQRGR-PRLDLL 66

Query: 68  INTHLHSDHCGGNAALQARYRCRTSIPHAEAGKVARWDEEALSYRATGQQCPRFAFDDTL 127
           +NTHLHSDHCGGNAALQ  + CR +IP AE  KV  WDE+ALSYRATGQ+C RF    TL
Sbjct: 67  VNTHLHSDHCGGNAALQQEHHCRIAIPAAEEEKVRHWDEDALSYRATGQRCARFTATQTL 126

Query: 128 QDGDTLMLGDLEWTALAAPGHDPHSLILHCAQEGILISADALWQNGFGVIFPELEGESGF 187
           + G+ L +G+L+W  LAAPGHDPH+L+ +CAQEG+L+SADALW+NGFG+IFPEL+G+SGF
Sbjct: 127 RSGEVLRMGELDWQVLAAPGHDPHALLFYCAQEGVLVSADALWRNGFGIIFPELDGQSGF 186

Query: 188 A---SPXETVRAVHGREAGAGEG 207
           A   +  E +R++  R    G G
Sbjct: 187 AEARATLELIRSLEVRTVIPGHG 209


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 776,913
Number of extensions: 33869
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,236,335
Effective search space: 160723550
Effective search space used: 160723550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)