BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0160.0004.p
         (111 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313971|ref|YP_003778063.1| hypothetical protein Hsero_4689...   147   2e-37

>gi|300313971|ref|YP_003778063.1| hypothetical protein Hsero_4689
           [Herbaspirillum seropedicae SmR1]
          Length = 136

 Score =  147 bits (371), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/103 (67%), Positives = 81/103 (78%), Gaps = 12/103 (11%)

Query: 8   VXEEAYLRATWHPDTLPEEPLTAEDDVKWIGLDVIRHKHVKGADEGADKGADKGADEATV 67
           + +EAYLRATW PDTLPEE LT+E DVKWIGLD+ +H+HV G+DE            ATV
Sbjct: 46  LRDEAYLRATWFPDTLPEEELTSETDVKWIGLDIKKHQHVAGSDE------------ATV 93

Query: 68  EFVARFKVGGRGHRLHEVSSFVRQPDAAGVARWYYVDGAFPDD 110
           EFVARFKV GR HRLHE+S+FVRQPDAAG  RWYYVDG+FP+D
Sbjct: 94  EFVARFKVAGRAHRLHEISNFVRQPDAAGQMRWYYVDGSFPED 136


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.134    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 331,921
Number of extensions: 9436
Number of successful extensions: 13
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 111
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 38
Effective length of database: 1,274,215
Effective search space: 48420170
Effective search space used: 48420170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 124 (52.4 bits)