BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0159.0037.p
         (183 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313991|ref|YP_003778083.1| major facilitator superfamily p...    84   8e-18
gi|300311754|ref|YP_003775846.1| Bcr/CflA family drug resistance...    65   3e-12
gi|300312966|ref|YP_003777058.1| major facilitator superfamily p...    61   6e-11

>gi|300313991|ref|YP_003778083.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score = 84.0 bits (206), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 63/100 (63%)

Query: 12  LAALTGVGMLATDLYLPALPHLAHDLGSDVPAVQATISSFMIALALSQLLWGALADKLGM 71
           LA LT +G LA D+YLP+   +A DLG     VQ T+++F+I +A+ Q+ +G L+D+ G 
Sbjct: 20  LAGLTAMGALAIDMYLPSFTAIAQDLGVGTNQVQLTLATFLIGVAVGQMFYGPLSDRFGR 79

Query: 72  RNTLLAGVALLAVTGVACALAEDVDALIIYRTVQGIGAGA 111
           +  L  G+AL  V  + C  A++++ LI+ R  QG+G  A
Sbjct: 80  KPPLFFGIALYFVCSLLCIFAQNIETLIVLRLFQGLGGSA 119


>gi|300311754|ref|YP_003775846.1| Bcr/CflA family drug resistance
           transporter protein [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score = 65.5 bits (158), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 59/107 (55%)

Query: 5   PLLQIVPLAALTGVGMLATDLYLPALPHLAHDLGSDVPAVQATISSFMIALALSQLLWGA 64
           P   +  + A    G LA DLY+PALP +A D  +   A+Q++++ ++IA A  QL++G 
Sbjct: 19  PRFLLFLICAFASAGQLAIDLYVPALPEMAIDYATSAQAIQSSVTGYLIAYAFGQLVFGP 78

Query: 65  LADKLGMRNTLLAGVALLAVTGVACALAEDVDALIIYRTVQGIGAGA 111
           LAD  G +  L  G+ L ++  V    A +++  +  R +QG G  A
Sbjct: 79  LADAYGRKRILALGLGLFSLGCVLSLAAPNLETFVAARVLQGFGIAA 125


>gi|300312966|ref|YP_003777058.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 544

 Score = 60.8 bits (146), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 48/79 (60%)

Query: 30  LPHLAHDLGSDVPAVQATISSFMIALALSQLLWGALADKLGMRNTLLAGVALLAVTGVAC 89
           LP +A DLG+    ++  +SS+++  A   L  GA AD+ G R  LL G+AL A+T +AC
Sbjct: 59  LPTVARDLGASFSQIEWVVSSYVLCFAALLLPAGATADRYGRRRVLLGGIALFALTSLAC 118

Query: 90  ALAEDVDALIIYRTVQGIG 108
           ALA    AL   R +QG+G
Sbjct: 119 ALAPSAQALYGARALQGVG 137


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 440,468
Number of extensions: 14284
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 3
Length of query: 183
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,241,070
Effective search space: 127830210
Effective search space used: 127830210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)