BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0159.0036.p
         (314 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310446|ref|YP_003774538.1| sulfite reductase, flavoprotein...   230   9e-62

>gi|300310446|ref|YP_003774538.1| sulfite reductase, flavoprotein
           component [Herbaspirillum seropedicae SmR1]
          Length = 850

 Score =  230 bits (587), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 124/232 (53%), Positives = 151/232 (65%), Gaps = 19/232 (8%)

Query: 1   VIGTWALVMYVVFTTTGMYWAFDWFKAGVNSLAGQEVRAPQAKREKPKGMGMDKEKDRAD 60
           VIGTW+LVMYV+F TTG YWA DWFK GVN+LAG+  RAP A+       G  K+KD  +
Sbjct: 191 VIGTWSLVMYVIFATTGAYWALDWFKDGVNTLAGETRRAPMAR-------GEGKKKDGPN 243

Query: 61  KAEAAPLDLTLAWDVFVREAGPYTLVNIRISDKTAQPVQFNYLLPDASHERARNRLNVLP 120
                 LDLT AW+ F+ +A  Y    +R+ ++  QP+Q  +L  DA HERAR+R+ VLP
Sbjct: 244 NQTPVALDLTQAWNAFLTKAPDYQSAQLRLPEQGTQPLQIFFLGHDAPHERARSRMVVLP 303

Query: 121 LTGEIKLNERFADKDAGGLFIGAIYPLHMGTYFGMPGRIVMTIAALIMPLFGITGWMLYL 180
            +GEIK  ER+ DK  GG FI AIYPLHMGTYFG+PGRI+M IA+L+MPLFGITGWMLYL
Sbjct: 304 QSGEIKQLERYEDKSTGGRFIAAIYPLHMGTYFGLPGRIIMAIASLMMPLFGITGWMLYL 363

Query: 181 DRRRKKRAV------------RAGGPGRFARSSARPHRERPAPQLAAVRRTS 220
           DRRRKK A+            +AGG    A +S     ER A   AA  R S
Sbjct: 364 DRRRKKAALRAERAALGEPQQQAGGQLLVAYASQTGQAERIALHTAARLRRS 415


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 930,419
Number of extensions: 34337
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,217,395
Effective search space: 278783455
Effective search space used: 278783455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)