BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0159.0035.p
         (212 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310446|ref|YP_003774538.1| sulfite reductase, flavoprotein...   198   3e-52

>gi|300310446|ref|YP_003774538.1| sulfite reductase, flavoprotein
           component [Herbaspirillum seropedicae SmR1]
          Length = 850

 Score =  198 bits (504), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 96/147 (65%), Positives = 115/147 (78%)

Query: 1   LADTLQPLASRRYSVASVPEDERVHLLVRQVAHEDGFGLASGWLTEYAPLGSTVELRLLE 60
           LA  LQPL +R YSVAS  +D  V LLVRQ  HEDG GLASGWLTEYAPLG+ ++ RL++
Sbjct: 645 LAQQLQPLTARSYSVASAMQDGTVQLLVRQQRHEDGLGLASGWLTEYAPLGARLQARLVD 704

Query: 61  NSSFALAPEPTPAIFIGNGSGLAGLRGHLRARIASGQRRNWLLFGERHRAHDFLYREEIE 120
           N+ FA     TPAIFIGNGSG+AGLRGHLR RI +G  RNWLLFGER+  +DFLYREE++
Sbjct: 705 NAGFAPVSADTPAIFIGNGSGMAGLRGHLRQRIHAGGTRNWLLFGERNERYDFLYREELQ 764

Query: 121 QWMQDDMLSRVDIAFSRDQPERVYVQD 147
            W+Q   L+R+D+AFSRDQ  R+YVQD
Sbjct: 765 AWLQQGQLARLDLAFSRDQEARIYVQD 791


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 699,821
Number of extensions: 33242
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,236,335
Effective search space: 161959885
Effective search space used: 161959885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)