BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0159.0031.p
         (325 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310444|ref|YP_003774536.1| signal peptide protein [Herbasp...   328   4e-91

>gi|300310444|ref|YP_003774536.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  328 bits (841), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 165/319 (51%), Positives = 220/319 (68%), Gaps = 19/319 (5%)

Query: 13  ENQETRMRFPISEPLHQSLRAVVAATVVATLLAVSLAVCASALAAESS----GGPALQEK 68
           E +E+R+R  +S  L + L A  A         ++L +C +A A   +    G  A++ +
Sbjct: 2   EREESRLRSTLSR-LSRPLMACAA---------LALVLCGAAQAQAQNQTQAGMAAMKSR 51

Query: 69  YQALQPQLTNNQFARPLYLNSTESSSSIKGDIYAVIDYPFAQVRNSLTTPAHWCDVLILH 128
           Y+ LQ +L+NN + RPLYLNS E  S++KGDIYAV+ YPFAQVR +L  P HWCD+LILH
Sbjct: 52  YEELQGELSNNAYQRPLYLNSREQDSTVKGDIYAVLAYPFAQVREALDGPEHWCDILILH 111

Query: 129 LNTKYCRPGPGQNPATLSMRVGKKHDQAIDDAYRIDFNYRVPANGDDYFDVRLAADKGPI 188
           LNTKYCR        TL M+VGKK +Q ++D YR+D  Y   ++  +YF   + ADKGP+
Sbjct: 112 LNTKYCRLLREGGKTTLRMQVGKKTEQDLNDTYRVDLRYHGGSSAAEYFSSSMLADKGPL 171

Query: 189 DTRDYRIQLEAVPLGDGRSFLHLTYSYSFGLAXRRRVALRAYLATAGSDKVGFTQDKSDK 248
           DT +YRI++EA+PL + RSFLH +Y+YS+G+A   R+ALRAYL T G DKVGF+  K D 
Sbjct: 172 DTSNYRIEIEAIPLDERRSFLHFSYAYSYGMAS--RLALRAYLMTVGRDKVGFSVVKRDA 229

Query: 249 SG---YIGGMRGTVERNTMRYYLAIDAFLSGLAAPPQQQLEQRLQTWFSATERYPRQLHE 305
           +G   Y+ G R TVERNTMRYYLAIDA+L+ L AP  ++LE+RL  W+ ATE+YPRQLHE
Sbjct: 230 NGQAQYVSGSRATVERNTMRYYLAIDAYLAALEAPAGERLEKRLAAWYGATEQYPRQLHE 289

Query: 306 VDKNEYLVMKRKEYARQNR 324
           + + EYL MKRKE ARQ +
Sbjct: 290 LTREEYLSMKRKEVARQQK 308


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 895,460
Number of extensions: 35196
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 240
Effective length of database: 1,217,395
Effective search space: 292174800
Effective search space used: 292174800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)