BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0159.0028.p
         (98 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311809|ref|YP_003775901.1| two component response regulato...   142   4e-36
gi|300311884|ref|YP_003775976.1| two component response regulato...    55   1e-09

>gi|300311809|ref|YP_003775901.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score =  142 bits (359), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 79/89 (88%)

Query: 3   ARERFESLVVLLDVNMPRVSGVDVLKRLKENESTAAIPIIMLTTTDDPREIERCYDYGCN 62
           +R   + LVVLLDVNMPRV+GV+VL+RLK +   +AIP+IMLTTTDDPREI RCY+YGCN
Sbjct: 54  SRTELQQLVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCN 113

Query: 63  LYITKPVEYEAFIEAVRRLGFFLQIIKVP 91
           +YITKPVEYE FIEA+RRLGFFLQ++K+P
Sbjct: 114 VYITKPVEYEDFIEAIRRLGFFLQVVKLP 142


>gi|300311884|ref|YP_003775976.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 151

 Score = 54.7 bits (130), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 42/68 (61%)

Query: 19  PRVSGVDVLKRLKENESTAAIPIIMLTTTDDPREIERCYDYGCNLYITKPVEYEAFIEAV 78
           P +SG D LK +K N +T+ IP++M +++DD R+I + Y+ G N Y+ K  + + F+  V
Sbjct: 70  PLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKSTDPKEFMGTV 129

Query: 79  RRLGFFLQ 86
              G + +
Sbjct: 130 VDTGIYWR 137


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.143    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 283,586
Number of extensions: 9269
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 3
Length of query: 98
Length of database: 1,619,870
Length adjustment: 67
Effective length of query: 31
Effective length of database: 1,302,625
Effective search space: 40381375
Effective search space used: 40381375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 123 (52.0 bits)