BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0159.0027.p
         (238 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311810|ref|YP_003775902.1| two component sensor histidine ...   167   9e-43

>gi|300311810|ref|YP_003775902.1| two component sensor histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 535

 Score =  167 bits (422), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 80/140 (57%), Positives = 106/140 (75%)

Query: 99  RLRQAEDDARAYREELERHARELTAVNEDLQRQTQDNEMFIYSVSHDLRSPLVNLQGFSK 158
           RL++A   +  YR +LER ARELT +N DL +QTQDNEMFIYSVSHDLRSPLVNLQGFSK
Sbjct: 248 RLQEASQQSEQYRSQLERRARELTELNADLLQQTQDNEMFIYSVSHDLRSPLVNLQGFSK 307

Query: 159 ELHHSVGELHDTINASDLNDGDKQRIRDIIEEDVEVSLRFIRTAVTRSAAIIDAMLRLSR 218
           E+ H+  +L + + A  + D DK ++R ++ +D++ +LRFI+ AVTRSA IID+MLRLSR
Sbjct: 308 EIGHATTDLLNAVQALPVPDADKAKLRSVVADDIQPALRFIQNAVTRSAGIIDSMLRLSR 367

Query: 219 VGRVEYQAQETNVDEIVARV 238
            GRVEYQ    +++ I  R+
Sbjct: 368 AGRVEYQPVMLDMNVIAQRI 387



 Score =  107 bits (268), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 101/179 (56%), Gaps = 33/179 (18%)

Query: 1   MKLFRKGLLLVAIPGMFELGLLGILYKSQENATRAEVWALHTKDVIIQAGEVREPVLLQS 60
           M+L  KGLL+VAIPG+FE+ LL  L+KSQ +A  AE WA H+ +VI +A +VREP+LL+S
Sbjct: 1   MRLLTKGLLIVAIPGLFEIVLLAALFKSQADAADAERWAAHSAEVINKAADVREPLLLES 60

Query: 61  ARLRAAIILNDPSGLEKNDLWDSLDKEIGE-----------------LRALVGXARLRQA 103
           AR+R AII++DPS + + +LW  L+ ++G+                 LR LVG  R+   
Sbjct: 61  ARIRNAIIIDDPSPISRPELWTDLEIKLGDLARLVSDNPEQSHSVQALRELVGQFRVW-- 118

Query: 104 EDDARAYREELERHARELTAVNEDLQRQTQDNEMFIYSVSHDLRSPLVNLQGFSKELHH 162
              A + RE ++R  R      ++L RQ +D +       H L   L  L GF  E  H
Sbjct: 119 ---ADSARERMQRGQR------DELVRQLRDEQG-----PHRLSDFLNRLDGFLNEERH 163


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 672,245
Number of extensions: 26471
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 2
Length of query: 238
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 156
Effective length of database: 1,231,600
Effective search space: 192129600
Effective search space used: 192129600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)