BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0159.0026.p
         (344 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309385|ref|YP_003773477.1| acyl-CoA transferase [Herbaspir...   453   e-129

>gi|300309385|ref|YP_003773477.1| acyl-CoA transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 500

 Score =  453 bits (1165), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 237/348 (68%), Positives = 265/348 (76%), Gaps = 30/348 (8%)

Query: 11  SFQNRAGEPDVFRTYSAGAGR-QSCXGLMAEAGLLARRMPFQVDGTLRRKINAGEVMFID 69
           +  +RA + ++  T   GA       GLMAEAGLLARR+PFQVD TLRRKINAGEVMFID
Sbjct: 48  ALADRAAQEELHFTVITGASLGNGSDGLMAEAGLLARRLPFQVDPTLRRKINAGEVMFID 107

Query: 70  QHLSETAEQLRNGTPGAIDIAVIEAAAITSEGIIPTMSVGNSASFVEQAGMIVIELNASV 129
           QHLSETAEQLR+GTP  IDIAVIEAAAIT EGI+PTMSVGNSASFVEQA  IVIELN SV
Sbjct: 108 QHLSETAEQLRSGTPSRIDIAVIEAAAITEEGIVPTMSVGNSASFVEQARQIVIELNTSV 167

Query: 130 PMALAGLHDIYLPQGRPGRQPIPLTSPEQRIGTRAIPFDPARIAAIVVTDMPDSPSSVLP 189
           P+AL GLHDIYLP  RP R+PIPLT  +QRIG+  IPFDPA++ AIV+T  PDSPSSVLP
Sbjct: 168 PLALEGLHDIYLPAARPAREPIPLTVADQRIGSTTIPFDPAKVVAIVLTQTPDSPSSVLP 227

Query: 190 PDDETKAIAGHVIRFLEAEVDSA------------------------IE-----LLDSGQ 220
           PDDET+AIAGHVI FLE EV++                         +E     L+   +
Sbjct: 228 PDDETRAIAGHVIHFLECEVEAGRLPHTLAPLQAGIGTIANAVLHGLVESPFRNLVMYSE 287

Query: 221 LRFXSAIELLDSGQLRFASASSITLSPAMNEKFMRNLDHYRSRIVLRPQEISNHPELVRR 280
           +   SAI+LLDSGQL FASASSITLS      F+ N+D YR ++VLRPQEISNHPELVRR
Sbjct: 288 VLQDSAIDLLDSGQLAFASASSITLSQDKYAHFLANIDRYRDKVVLRPQEISNHPELVRR 347

Query: 281 LGIIALNTALEFDLYGNVNSTHVGGTHMMNGIGGSGDFARNGQLSIFV 328
           LGII LNTALEFDLYGNVNSTHVGGTHMMNGIGGSGDFARNGQ+SIFV
Sbjct: 348 LGIIGLNTALEFDLYGNVNSTHVGGTHMMNGIGGSGDFARNGQISIFV 395


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 973,204
Number of extensions: 38226
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 258
Effective length of database: 1,212,660
Effective search space: 312866280
Effective search space used: 312866280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)