BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0159.0025.p (205 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309386|ref|YP_003773478.1| LysR family transcription regul... 286 7e-79 gi|300311571|ref|YP_003775663.1| LysR family transcription regul... 95 4e-21 gi|300310637|ref|YP_003774729.1| LysR family transcription regul... 89 3e-19 gi|300312961|ref|YP_003777053.1| transcription regulator protein... 87 1e-18 gi|300311724|ref|YP_003775816.1| LysR family transcription regul... 76 2e-15 >gi|300309386|ref|YP_003773478.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 286 bits (733), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 139/176 (78%), Positives = 153/176 (86%) Query: 1 MDIRALRYFSETVRLNSFSRAADALHVTQSTVSKMVRQLEDEIGTPLLIRAGRSLQLTDT 60 MDIRALRYF+ETVR +SFSRAADALHVTQSTVSKMVRQLE+E+ PLLIR GR LQLTDT Sbjct: 1 MDIRALRYFTETVRHSSFSRAADALHVTQSTVSKMVRQLEEEVDAPLLIRDGRRLQLTDT 60 Query: 61 GRVVYEQAQQILAGVQRLNTEIHNTRNLRQGHLEIGIPPMVNILCTPVLKAFRERHPEIA 120 GRVVYEQ QQILA +QRL+ E+ +T+ LR G LEIGIPPM+NILCTPVLKAFRERHP+IA Sbjct: 61 GRVVYEQGQQILAAMQRLHAEVRDTKALRSGRLEIGIPPMINILCTPVLKAFRERHPDIA 120 Query: 121 ITLLEDTGPQIEQRVAAGTLEIGMTVLPVAPELELEMTPVAAYPIWAVAQAGRFXK 176 + L EDTGPQIEQRVA G LEIGMTVLP PEL LE PVA+YP+WAVAQAG F K Sbjct: 121 VVLQEDTGPQIEQRVANGELEIGMTVLPADPELGLETLPVASYPMWAVAQAGSFQK 176 >gi|300311571|ref|YP_003775663.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 95.1 bits (235), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 56/135 (41%), Positives = 77/135 (57%), Gaps = 2/135 (1%) Query: 1 MDIRALRYFSETVRLNSFSRAADALHVTQSTVSKMVRQLEDEIGTPLLIRAGRSLQLTDT 60 M++R LRYF V S SRAA ALH+ Q +++ +RQLEDE+ LL R+ + + TD Sbjct: 1 MELRQLRYFVAIVDHGSLSRAARALHIAQPALTQQIRQLEDELAAQLLHRSAQGVIATDA 60 Query: 61 GRVVYEQAQQILAGVQRLNTEIHNTRNLRQGHLEIGIPPMV-NILCTPVLKAFRERHPEI 119 G+V YE A IL VQ + + + G + +GIP V N L P+L A R +PEI Sbjct: 61 GKVFYEHALAILKQVQDAKQAVGQSADKPSGTVALGIPQSVSNALALPLLNAVRSTYPEI 120 Query: 120 AITLLED-TGPQIEQ 133 + L E+ TG I Q Sbjct: 121 TLQLTEELTGNLITQ 135 >gi|300310637|ref|YP_003774729.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 89.0 bits (219), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 1/145 (0%) Query: 1 MDIRALRYFSETVRLNSFSRAADALHVTQSTVSKMVRQLEDEIGTPLLIRAGRSLQLTDT 60 MDIR L+YF +F+RA++ LH+ Q +S+ ++ LE+E+G LL+R R L+LT+ Sbjct: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLLLRNSRPLRLTEA 60 Query: 61 GRVVYEQAQQILAGVQRLNTEIHNTRNLRQGHLEIGIPPMVNILCTPVL-KAFRERHPEI 119 GRV YEQA QIL + +L ++ L IG P+L + R+ +PE+ Sbjct: 61 GRVFYEQALQILNRLDQLKNATQQIGLNQRQTLSIGFVASTLYGGLPMLVRKLRQHYPEV 120 Query: 120 AITLLEDTGPQIEQRVAAGTLEIGM 144 I LLE T Q + +G +++G Sbjct: 121 DIQLLELTSMQQFAALKSGRIDVGF 145 >gi|300312961|ref|YP_003777053.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 86.7 bits (213), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 6/171 (3%) Query: 1 MDIRALRYFSETVRLNSFSRAADALHVTQSTVSKMVRQLEDEIGTPLLIRAGRSLQLTDT 60 M++R L+YF+ SFSRAA+ LH+ Q +S+ +RQLE+ +G L+ RA R + LT Sbjct: 1 MELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMA 60 Query: 61 GRVVYEQAQQILAGVQRLNTEIHNTRNLRQGHLEIG-IPPMVNILCTPVLKAFRERHPEI 119 G+ YEQ Q+L+ ++++ RQ IG +P + L ++K FR PEI Sbjct: 61 GKFFYEQTLQVLSRLEQIEEGTRVIARGRQHWFNIGFVPSALYGLLPEMIKRFRTEMPEI 120 Query: 120 AITLLEDTGPQIEQRVAAGTLEIGMTVLPVA-PELELEMTP----VAAYPI 165 I E + + + +G +++G LP++ P++ E VA +P+ Sbjct: 121 EIGFSEIVTMEQVEALKSGRIDVGFGRLPISDPDIVCETIVEEPLVAVFPL 171 >gi|300311724|ref|YP_003775816.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 297 Score = 76.3 bits (186), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 1/147 (0%) Query: 1 MDIRALRYFSETVRLNSFSRAADALHVTQSTVSKMVRQLEDEIGTPLLIRAGRSLQLTDT 60 +DI ++ F SF AA ALHVTQ+ V+ +R+LED +G L+ R RS+ LT+ Sbjct: 3 IDILGVQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSIALTEI 62 Query: 61 GRVVYEQAQQILAGVQRLNTEIHNTRNLRQGHLEIGIPPMVNILCTP-VLKAFRERHPEI 119 GR QA+++LA + EI T R+G + I P V + P +L+A+ R+P Sbjct: 63 GRDFLPQARRLLAELAGALVEIRETGIARRGDVSIACVPTVGVQYLPRILQAYSARYPHN 122 Query: 120 AITLLEDTGPQIEQRVAAGTLEIGMTV 146 I +L+ + + V +E G+ + Sbjct: 123 RIKILDHASSAVAEAVLRREVEFGIHI 149 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 631,315 Number of extensions: 25876 Number of successful extensions: 214 Number of sequences better than 1.0e-08: 64 Number of HSP's gapped: 193 Number of HSP's successfully gapped: 64 Length of query: 205 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 124 Effective length of database: 1,236,335 Effective search space: 153305540 Effective search space used: 153305540 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)