BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0159.0021.p
         (157 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311595|ref|YP_003775687.1| two component response regulato...    96   1e-21
gi|300310564|ref|YP_003774656.1| regulator of the two-component ...    86   1e-18

>gi|300311595|ref|YP_003775687.1| two component response regulator
          protein [Herbaspirillum seropedicae SmR1]
          Length = 310

 Score = 95.9 bits (237), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 62/82 (75%)

Query: 1  MPNFIDPTDFEALKQDDALPSPSGVRLNIMRMCRQEDVSLVDLVTQIQADPVLGGRIIKI 60
          M  ++DP  F  ++  + LP+PSGVRL IM+MC+QED++L +LV Q+Q DPVL GR+I+I
Sbjct: 1  MSTYVDPQTFREMQDSEVLPAPSGVRLKIMQMCQQEDIALPELVAQVQGDPVLAGRLIQI 60

Query: 61 GNGASVNKGRPIVAISKDVLLM 82
           N  ++NKGR + +++ ++LLM
Sbjct: 61 ANIPNINKGRMVASVNVELLLM 82


>gi|300310564|ref|YP_003774656.1| regulator of the two-component
          system protein [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score = 86.3 bits (212), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 56/82 (68%)

Query: 1  MPNFIDPTDFEALKQDDALPSPSGVRLNIMRMCRQEDVSLVDLVTQIQADPVLGGRIIKI 60
          M  FI+PT F+ L+   ALPSP GVRL IMR+C Q++  + +L+  +QADP L GRII+I
Sbjct: 1  MLTFIEPTLFDKLRSAQALPSPGGVRLTIMRLCAQDNPDMAELIHLVQADPALSGRIIRI 60

Query: 61 GNGASVNKGRPIVAISKDVLLM 82
           N  +  + RPI ++S D LL+
Sbjct: 61 VNVLNAQRVRPIASVSMDSLLL 82


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 543,491
Number of extensions: 23119
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 157
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,250,540
Effective search space: 98792660
Effective search space used: 98792660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)