BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0159.0012.p
         (285 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309778|ref|YP_003773870.1| nucleoside-diphosphate-sugar ep...    79   3e-16

>gi|300309778|ref|YP_003773870.1| nucleoside-diphosphate-sugar
           epimerase [Herbaspirillum seropedicae SmR1]
          Length = 288

 Score = 79.3 bits (194), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 115/244 (47%), Gaps = 9/244 (3%)

Query: 2   ILVTGAAGLSGAHIVRELAAQRVPFRALVRNRSKAVSLLPGHVDIVEGDMSRPETLGPAL 61
           ILVTGA G  G+ +V+ LAA     RALVR+  K    LP  V  V GD+    +L  AL
Sbjct: 3   ILVTGATGAVGSLVVQGLAAAGAEVRALVRSPGKMA--LPADVKEVVGDLREVTSLRTAL 60

Query: 62  EGVAKALLISSGDARMLETQCSFIDACKRAGVEHVVKFSGNETGFDRSRFRFTEMHAQAE 121
           +GV    ++++     L    + ++   +AG+E +V  S            FT  H   E
Sbjct: 61  QGVRTLFVLNAVAPDELTQALNVLNLAHQAGIERIVYLSVIHADRFTDVPHFTGKHT-VE 119

Query: 122 RYLERSGLRWTHLQPCGFMQVYLREARTIKESGELRLAAGDITLAPIDVLDIARISTAVL 181
           R +E SGL  T L+P  FMQ  +     +   G   +  G   +  IDV DIA I+ A L
Sbjct: 120 RMIEGSGLPATILRPAYFMQNDVPLLPVLSSYGVYPMPIGPSGVEMIDVRDIADIAVAEL 179

Query: 182 QAPWQDGR----RHL-MTGPEALTMSQIAGLISKVAGRPVNYVAITPEERRQEMLAAGVP 236
            A  +  +    R L + GP++ T +Q A + S+V  RP+       +   Q+ LAA  P
Sbjct: 180 LARDRADKPLPTRTLDLVGPQSFTGAQAAAVWSEVLQRPIQAGGDDLDAFEQQ-LAAQAP 238

Query: 237 AYFA 240
            + A
Sbjct: 239 DWMA 242


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 887,310
Number of extensions: 36825
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,222,130
Effective search space: 245648130
Effective search space used: 245648130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)