BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0159.0011.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310022|ref|YP_003774114.1| glutathione S-transferase [Herb...    60   2e-10
gi|300311017|ref|YP_003775109.1| glutathione S-transferase famil...    57   1e-09

>gi|300310022|ref|YP_003774114.1| glutathione S-transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 204

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 92/209 (44%), Gaps = 16/209 (7%)

Query: 6   VEIYGIPESNFTRAVRMVCEEKALDYDHF--PVRPHSDEANAIHPLGKVPGLRHGQ-VTL 62
           +++ G   S F R VR+V  EK +DY+     V   S      +PLGKVP L       +
Sbjct: 2   LKLIGSNASPFVRKVRVVMAEKKIDYEFILEDVWSASTTIQQSNPLGKVPCLLMDDGGAM 61

Query: 63  GESRAIVAYLDCLYPETPMM-PTSPDAAEAEQWVSIVMTAMD-PVLIRQYVFANLFPKTA 120
            +SR IV YLD L P   ++ P   + AE + W ++    +D  VL+R         KT 
Sbjct: 62  FDSRVIVEYLDTLTPVGKLLPPNGRERAEIKCWEALADGMLDAAVLVR-------LEKTL 114

Query: 121 DGTVDRA--AVEAPLPTLKAQIKLLDQALARKNFLAAARFTFADALLLSTLAAVRL-FPE 177
             T  ++   ++     ++A +K +   L  K F     ++ AD  +   L  +   FP+
Sbjct: 115 RPTKQQSPEWIKRQWSKVEASLKAMADGLGEKPFCVGNHYSLADVAVCCALGWLAFRFPD 174

Query: 178 GAHAIDAAPNLAHYVNLHSARASFIATDP 206
            A   D  P LA   +  S R SF  T P
Sbjct: 175 LAWRED-YPMLARLFDKVSERVSFKDTAP 202


>gi|300311017|ref|YP_003775109.1| glutathione S-transferase family
           protein [Herbaspirillum seropedicae SmR1]
          Length = 223

 Score = 56.6 bits (135), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 33/211 (15%)

Query: 15  NFTRAVRMV--CEEKALDYD--HFPVRPHS----DEANAIHPLGKVPGLRHGQVTLGESR 66
           N +R+ R++   EE  LDY+   +   P +     E   +HPLGK P +  G++T+ ES 
Sbjct: 8   NNSRSQRVLWLLEELGLDYEIKFYQRDPKTMLAPPELLKVHPLGKSPVITDGELTVAESG 67

Query: 67  AIVAYLDCLY-PETPMMPTS--PDAAEAEQWVSIVMTAMDPVLIRQYVFANLFPKT---- 119
            I+ YL   Y   + ++P S  P+      W+     +  P L+ Q +FA + PK     
Sbjct: 68  NIIEYLLERYGAHSGLLPASGTPERLRYRYWLHFAEGSAMPWLVMQLIFAKM-PKAVPTL 126

Query: 120 --------ADGTVDRAAVEAPLPTLKAQIKLLDQALARKNFLAAARFTFADALLLSTLAA 171
                   A+G   R       P  + Q++ ++  L ++ + A A+F+ AD  +   + A
Sbjct: 127 IRPIARMLAEGMRSRVVA----PQQERQLRFMEDELGQQGWFAGAQFSGADIQMSFPVEA 182

Query: 172 VRLFPEGAHAIDAA-PNLAHYVNLHSARASF 201
           +R        +D   PNL  Y+    AR ++
Sbjct: 183 LR----ARGGLDGRYPNLLKYLEAIHARPAY 209


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 707,040
Number of extensions: 27891
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)