BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0159.0006.p
         (452 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309397|ref|YP_003773489.1| ferrous iron transport B transm...   261   7e-71

>gi|300309397|ref|YP_003773489.1| ferrous iron transport B
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 608

 Score =  261 bits (668), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 156/281 (55%), Positives = 197/281 (70%), Gaps = 16/281 (5%)

Query: 1   VVETVAVQQQGATALADAVDAWRNRHSDSRPDAWVSCRFGDAATPMSASERQQAVRSILD 60
           V+ETVAV++ GA AL  A+D      + + PD                 +    VR++L 
Sbjct: 149 VIETVAVKRGGARALVAAIDGGEPVAAPAVPDI---------------DDLHVEVRALLA 193

Query: 61  VAVTERTQARTTEDRIDAWVLHPVFGYVLLLALLFTIFQAVFSWSALPMEMIKTGVDGIG 120
           V V         +D ID   LHPV G +LL   +F +FQAV++      + I  G   +G
Sbjct: 194 VTVVMPAPTDGRDDAIDRIALHPVLGVLLLALTMFLVFQAVYAIGKPMTDAIADGFGTLG 253

Query: 121 ALVTQFMPEGLLRSLIVDGIISGVGSVLVFLPQILVLFFFILLLEDSGYLPRAAFLLDRL 180
            +V +++PEG LR L+ DG+++G+G+VL FLPQILVLFFFILLLE+SGYLPRAAF+LD+L
Sbjct: 254 GVVGEWLPEGPLRGLVTDGLVAGLGTVLGFLPQILVLFFFILLLEESGYLPRAAFVLDKL 313

Query: 181 MGSVGLSGRAFIPLLSSFACAIPGVMATRTIQNPRDRLATIMIAPLMTCSARLPVYALII 240
           M SVGLSGR+FIPLLSSFACAIPG+M TR+I +PRDRLATI++APLMTCSARLPVYAL+I
Sbjct: 314 MVSVGLSGRSFIPLLSSFACAIPGIMGTRSITDPRDRLATILVAPLMTCSARLPVYALLI 373

Query: 241 GAFIPDRAV-GIFNLQGLVLFGLYVLGIVSAMAVAYVFKRV 280
           GAFIP R V G+FNLQGL LF LYV GI +AM VA+V KR+
Sbjct: 374 GAFIPHRPVLGVFNLQGLALFCLYVAGIAAAMLVAWVAKRI 414


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,395,057
Number of extensions: 57933
Number of successful extensions: 248
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 364
Effective length of database: 1,203,190
Effective search space: 437961160
Effective search space used: 437961160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)