BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0159.0002.p (152 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312674|ref|YP_003776766.1| two-component system transcript... 152 1e-38 gi|300311807|ref|YP_003775899.1| light-regulated signal transduc... 86 2e-18 gi|300312803|ref|YP_003776895.1| two component sensor histidine ... 83 1e-17 gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 65 2e-12 gi|300311948|ref|YP_003776040.1| sensor histidine kinase/respons... 59 2e-10 >gi|300312674|ref|YP_003776766.1| two-component system transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 372 Score = 152 bits (384), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 74/150 (49%), Positives = 100/150 (66%) Query: 1 LTRQPVSLDEVMQRVVQEHQAAFPESRIELQIDGNPAGHWDPDRLSQVAANLLGNAIRHG 60 L R L E+ +RVVQE+QA +P S IE +I+G+ G+WD DRL+QVAANLLGNA++HG Sbjct: 223 LARASACLGEITERVVQEYQATYPGSVIERRIEGDDNGYWDGDRLAQVAANLLGNALQHG 282 Query: 61 KPGETVLVLLDGNAPEQATFSVVNAGSIAPEVLPGIFDPFRSGAPYNGHNEGLGLGLYIV 120 +PG + + +DG + + + N G I ++LP IFDPFR G G EGLGLGL+I Sbjct: 283 EPGHPICIGIDGRSEHEVVMVIANRGVIPADLLPVIFDPFRGGEREAGRKEGLGLGLFIA 342 Query: 121 QQIVHAHQGEIDVQSGSGDKTVFTVTIPRQ 150 QQIV AH G I + S +T+ TV +PR+ Sbjct: 343 QQIVKAHGGSISMSSDDQLQTMVTVRLPRR 372 >gi|300311807|ref|YP_003775899.1| light-regulated signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 732 Score = 85.9 bits (211), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 86/152 (56%), Gaps = 8/152 (5%) Query: 1 LTRQPVSLDEVMQRVVQEHQAAFPESRIELQIDGNPAGHWDPDRLSQVAANLLGNAIRHG 60 + R+PV + +++ +V E + A+P++ I L+ + D DR+SQV +NL+ N HG Sbjct: 581 IQRRPVDVRKMVSEIVSEARMAYPDNEIILEAEDCGEIALDGDRISQVVSNLISNTRHHG 640 Query: 61 KPGE--TVLVLLDGNAPEQATFSVVNAGSIAPE-VLPGIFDPFRSGAPYNGHN-EGLGLG 116 + G+ T++V + T +V N G PE V +F P++ + N N GLGLG Sbjct: 641 EIGKPSTLIVF---RREDVLTIAVSNHGPAIPEPVRSNLFKPYKKESLGNQRNTRGLGLG 697 Query: 117 LYIVQQIVHAHQGEIDVQSGSGDKTVFTVTIP 148 LYIV +IVH H G+I V S + FTVT+P Sbjct: 698 LYIVSEIVHGHGGKIAV-SCDNNIITFTVTLP 728 >gi|300312803|ref|YP_003776895.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 82.8 bits (203), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/147 (36%), Positives = 82/147 (55%), Gaps = 6/147 (4%) Query: 10 EVMQRVVQEHQAAFPESRIELQIDGNPAGHWDPDRLSQVAANLLGNAIRHGKPGETVLVL 69 ++ QRV+ E + P+ I L+ G G WD +R++Q +NLLGNA++HG GE + V Sbjct: 236 DIAQRVIDEISTSHPDKVITLKTSGELNGEWDKERIAQAISNLLGNAVQHGATGEAIKVE 295 Query: 70 LDGNAPEQATFSVVNAGSIAP-EVLPGIFDPF----RSGAPYNGHNEGLGLGLYIVQQIV 124 + + E ++ N G + P E L IFDP +G +G +GLGLYIV+++ Sbjct: 296 ISASRGE-VHVAINNKGPLIPEEKLHTIFDPLVRLVANGGEGSGQGGSMGLGLYIVREVA 354 Query: 125 HAHQGEIDVQSGSGDKTVFTVTIPRQP 151 AH G + S + + T FT+ +PR P Sbjct: 355 SAHGGSVTASSSTAEGTTFTIRLPRDP 381 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 65.1 bits (157), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 73/151 (48%), Gaps = 7/151 (4%) Query: 4 QPVSLDEVMQRVVQEHQAAFPESRIELQIDGNPAG-HWDPDRLSQVAANLLGNAIRHGKP 62 + +SLD++++ VQ + RI+L D PA D LS + NL+ NA+R+ P Sbjct: 310 EELSLDKLVEESVQHFIEEADKKRIDLGFDLRPARLRGDRFLLSDLIDNLIDNAVRYSPP 369 Query: 63 GETVLVLLDGNAPEQATFSVVNAG-SIAPEVLPGIFDPFRSGAPYNGHNEGLGLGLYIVQ 121 TV V + SV ++G IAPE IFD F N G GLGL IV+ Sbjct: 370 HGTVTVRC-LEEQDATVLSVEDSGPGIAPEHRELIFDRFYRA---NDKVAGSGLGLAIVR 425 Query: 122 QIVHAHQGEIDVQSGS-GDKTVFTVTIPRQP 151 +I H H G I V G T+FTV P P Sbjct: 426 EIAHDHGGVISVDCKEQGQGTIFTVRFPLAP 456 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 58.9 bits (141), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/111 (40%), Positives = 57/111 (51%), Gaps = 4/111 (3%) Query: 39 HWDPDRLSQVAANLLGNAIRHGKPGETVLVLLDGNAPEQATFSVVNAG-SIAPEVLPGIF 97 H D RL Q+ NLLGNA++ G L L A E A F V++ G IA + IF Sbjct: 799 HADQKRLRQILINLLGNAVKFTDHGGVTLRL--RYAREIAYFDVIDTGIGIADDDRERIF 856 Query: 98 DPF-RSGAPYNGHNEGLGLGLYIVQQIVHAHQGEIDVQSGSGDKTVFTVTI 147 PF RS A + G GLGL I + +VH GE+ VQS G + F + I Sbjct: 857 LPFERSSAANLREDIGTGLGLAISRMLVHIMGGELSVQSQVGQGSSFHLKI 907 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 551,060 Number of extensions: 25162 Number of successful extensions: 156 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 170 Number of HSP's successfully gapped: 12 Length of query: 152 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 75 Effective length of database: 1,255,275 Effective search space: 94145625 Effective search space used: 94145625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)