BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0157.0002.p
         (136 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310893|ref|YP_003774985.1| dipeptide/oligopeptide/nickel A...   172   1e-44
gi|300312480|ref|YP_003776572.1| dipeptide/oligopeptide/nickel A...    57   7e-10

>gi|300310893|ref|YP_003774985.1| dipeptide/oligopeptide/nickel
          ABC transporter permease [Herbaspirillum seropedicae
          SmR1]
          Length = 324

 Score =  172 bits (435), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/95 (88%), Positives = 88/95 (92%)

Query: 1  MSGAILRSVLQALAVLLLMTVIVFFGLHMIGNPVDTLIGPDVDQVDRLRIIKELGFDQPI 60
          MSGAI RSV+QAL V+LLMTVIVFFGLHMIGNPVD LIG DVDQVDRLRII+ELG DQP+
Sbjct: 1  MSGAIARSVVQALMVVLLMTVIVFFGLHMIGNPVDILIGQDVDQVDRLRIIQELGLDQPV 60

Query: 61 WRQYLAFLNGALHGNLGNSFVYNEPAIKLIFQRLP 95
          WRQYLAFLNGALHGNLGNSFVYN PAI LIFQRLP
Sbjct: 61 WRQYLAFLNGALHGNLGNSFVYNTPAILLIFQRLP 95


>gi|300312480|ref|YP_003776572.1| dipeptide/oligopeptide/nickel
          ABC transporter permease [Herbaspirillum seropedicae
          SmR1]
          Length = 305

 Score = 56.6 bits (135), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 4/93 (4%)

Query: 5  ILRSVLQALAVLLLMTVIVFFGLHMIGNPVDTLIGPDVD--QVDRLRIIKELGFDQPIWR 62
          ILR +  AL V + ++V+ F  LHM G+   ++ GP+    QV+ +R   + G D+P+  
Sbjct: 5  ILRRLAIALCVAVTVSVVSFTLLHMSGDLAVSIAGPEATAAQVESVR--TQFGLDRPMAT 62

Query: 63 QYLAFLNGALHGNLGNSFVYNEPAIKLIFQRLP 95
          QYL +L  A+  + G SF +  P +++I +RLP
Sbjct: 63 QYLDWLGRAVQLDFGKSFYFQGPVMEMIAERLP 95


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.145    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 459,795
Number of extensions: 18645
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 2
Length of query: 136
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,260,010
Effective search space: 75600600
Effective search space used: 75600600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 125 (52.8 bits)