BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0156.0013.p
         (178 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312028|ref|YP_003776120.1| oxidoreductase protein [Herbasp...    67   7e-13
gi|300309662|ref|YP_003773754.1| aryl-alcohol dehydrogenase [Her...    56   2e-09

>gi|300312028|ref|YP_003776120.1| oxidoreductase protein
          [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score = 67.4 bits (163), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 54/88 (61%)

Query: 8  LQHRKLGNSAIEVAPLAFGGNVFGWTVDEATSFSLLDKFVDAGLNLVDTADVYSRWANGN 67
          +Q+R LG + ++V+ +  G   +G    EA + + LD  V+ G+NL+D A++Y       
Sbjct: 1  MQYRPLGRTDLKVSLITLGTMTWGEQNSEADAHAQLDYAVERGINLIDVAEMYPVPPKAE 60

Query: 68 KGGESETIIGKWIRQSGKRDKLVIATKV 95
            G +E  +G W+++SGKRD+L+IATK 
Sbjct: 61 TQGLTERYLGTWLKKSGKRDQLLIATKC 88


>gi|300309662|ref|YP_003773754.1| aryl-alcohol dehydrogenase
          [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score = 55.8 bits (133), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 9/92 (9%)

Query: 8  LQHRKLGNSAIEVAPLAFGGNVFGWTVDEATSFSLLDKFVDAGLNLVDTADVYSRWANGN 67
          + +R+LG S ++V+ L  G  +FG   D   S  ++    + G+N +DTADVY++     
Sbjct: 1  MHYRRLGKSNLKVSALCLGSMMFGDQTDLQESGRIVASAREHGVNFIDTADVYTK----- 55

Query: 68 KGGESETIIGKWIRQSGKRDKLVIATKVGMDM 99
            G+SE I+GK +  +G+R + V+A+K+G  M
Sbjct: 56 --GKSEEIVGKLL--AGQRHEWVLASKLGNAM 83


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 660,656
Number of extensions: 30074
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 2
Length of query: 178
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 99
Effective length of database: 1,245,805
Effective search space: 123334695
Effective search space used: 123334695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)