BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0156.0009.p
         (546 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314003|ref|YP_003778095.1| urease subunit alpha [Herbaspir...   528   e-151

>gi|300314003|ref|YP_003778095.1| urease subunit alpha
           [Herbaspirillum seropedicae SmR1]
          Length = 566

 Score =  528 bits (1360), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 277/570 (48%), Positives = 376/570 (65%), Gaps = 29/570 (5%)

Query: 1   MSSISRARYAGLYGPTTGDKIRLADTELLVEIERDYTIYGEESSYGLGKSIRAGMAQSSY 60
           MS ISR+ YA ++GPT GD++RLADTEL +E+E+DYT+YGEE  +G GK IR GM QS  
Sbjct: 1   MSKISRSAYAEMFGPTVGDRVRLADTELFLEVEKDYTVYGEEVKFGGGKVIRDGMGQSQR 60

Query: 61  SAANGAAEAVITNVVIVDHWGVLKADIGIIDGRISAIGKSGNPDLQPGVNIIIGPGTQVI 120
           + A+   + VITN +IVDHWG++KADIGI  G+I+ IGK+GNPD+QPGV + IG  T++I
Sbjct: 61  AHAD-VMDTVITNALIVDHWGIVKADIGIKSGKIAGIGKAGNPDIQPGVTMAIGGATEII 119

Query: 121 DGSGKILTAGTIAMDVPISSGDVLMAMAAAGTTTVIGGGSGPVTGSRVTGATPGAWTANR 180
            G G I+TAG I   +       +     +G TT++GGG+GP  G+  T  TPG W  + 
Sbjct: 120 AGEGMIVTAGGIDSHIHFICPQQIEEALMSGVTTMLGGGTGPAVGTAATTCTPGPWHIHS 179

Query: 181 LLDSLDAWPLNFVLVGLGSASQPGGLEAQVWAGAVGALNVHDTRGATPAAIDNCLSIADK 240
           +L + DA+P+N   +G G+ S P  LE Q+ AGA+G L +H+  G+TPAAIDNCL++AD+
Sbjct: 180 MLAAADAFPMNLGFLGKGNVSLPLPLEEQIRAGAIG-LKLHEDWGSTPAAIDNCLTVADR 238

Query: 241 YDVPVMITSDTANEFGFNEDTIAAFKGRTVILPDVGGVEGGHIPDVIRCAGLPNVIPASS 300
            D+ V I +DT NE GF E T++AFK RT+      G  GGH PD+I   G  NV+P+S+
Sbjct: 239 MDIQVAIHTDTLNEGGFLEHTLSAFKDRTIHTFHTEGAGGGHAPDIIAAVGEGNVLPSST 298

Query: 301 VAALPYTVDLIDGLYGSVMAANNLDPSIPEDVALAESIIHKETIAATDLLHDMGAISIVA 360
               P+TV+ +D     +M  ++LDP+I ED+A AES I +ETIAA D+LHD+GAIS+++
Sbjct: 299 NPTRPFTVNTLDEHLDMLMVCHHLDPAIAEDIAFAESRIRRETIAAEDILHDIGAISMMS 358

Query: 361 GSSVFPEANAEIVRRTWQMAHKMKIQRDPLPGDGS-NDNQRVKRYVAKYTINPAIACGIA 419
             S       E++ RTWQ AHKMK+QR  L  D S NDN R+KRY+AKYTINPAI  GIA
Sbjct: 359 SDSQAMGRVGEVIMRTWQTAHKMKVQRGSLKEDTSRNDNFRIKRYIAKYTINPAITHGIA 418

Query: 420 HVTGSVEPGKLADLVLWDPAYFGTQPALVLKGGVATS----------------------D 457
           HV GS+E GKLAD+VLW PA+FG +P+++LK G+  +                       
Sbjct: 419 HVVGSLEVGKLADIVLWKPAFFGAKPSMILKSGMIAAAQMGDPNASIPTPQPVHYRMMFG 478

Query: 458 GSGGLLSTDQSIVFISKSSLEMN-GITVSLRHRIEAVRDTRGSVGKHSMIHNTSTPVVEI 516
             GG L T  S+ F+S+++ +   G  + L   + AV++ R ++ K  MIHN +TP +E+
Sbjct: 479 AYGGGLKT--SMTFVSQAAFDAGIGEQLKLNKPVVAVKNMR-NLRKRDMIHNGATPKMEV 535

Query: 517 DPETFEVRADGELLTAEPATVLPLGQRYLL 546
           D ET+EVRADGELL  EPA  LPL QRY L
Sbjct: 536 DAETYEVRADGELLVCEPAVSLPLAQRYFL 565


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,778,671
Number of extensions: 77159
Number of successful extensions: 234
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 456
Effective length of database: 1,193,720
Effective search space: 544336320
Effective search space used: 544336320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)