BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0156.0006.p
         (525 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310916|ref|YP_003775008.1| phospholipase C protein [Herbas...   475   e-135
gi|300311919|ref|YP_003776011.1| non-hemolytic phospholipase C (...    74   3e-14

>gi|300310916|ref|YP_003775008.1| phospholipase C protein
           [Herbaspirillum seropedicae SmR1]
          Length = 558

 Score =  475 bits (1222), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 253/524 (48%), Positives = 334/524 (63%), Gaps = 32/524 (6%)

Query: 13  GGNANIAGDDAAVRS-IDTVVVIYAENRGFDTLYGLFPGANG-VPGVNPSSKGAYLPQVD 70
           G  A  A  D A+R  + T+VVIYAENR F+ L+  FPG    +  + PS       Q D
Sbjct: 47  GNPAEAAALDRALREQVKTIVVIYAENRSFNNLFADFPGLEKPLSALKPSD----YQQRD 102

Query: 71  VDGAVLPVLPPTWGGV-----TAPGQTKVMTQAQSAGMPNKPFQIDGKTGMNVGSDVVTR 125
            DG++L  LPP W GV     T  G T    +     +PN P+ + G  G  +   +VTR
Sbjct: 103 RDGSLLKQLPPAWSGVVNQEQTVEGVTYEAGKQYQTNLPNAPYALKGPQGEALPLGLVTR 162

Query: 126 DLVHRYYNNQMQINGGRNDKFATYSDAGGLSMGYYDGSS--MAMWQLAKEYTLADNFFMG 183
           DL H +Y NQMQINGG+ND F  ++D+GGL+MG+Y  +   + +W +A+E+ L DNFF G
Sbjct: 163 DLWHVFYQNQMQINGGKNDGFVAWADSGGLTMGHYADTRYHLRLWDVAREFVLCDNFFQG 222

Query: 184 SFGGSFQNHQYLICACTPQYPNADKSPAKGGISKIDVDANGNFVRLTPAASSPKSTLDGA 243
           +FGGSF NHQYLICA  P YPN   S ++  ++K   + +     L PA  SP S L G 
Sbjct: 223 AFGGSFLNHQYLICATAPYYPNVMNSVSRTQVAKTK-NNDPLSPELVPAEGSPTSALQGP 281

Query: 244 QKYANDGTLTPPDDKGMYYAVNTMQPPYQPSNVAAPASDAAKLYADPNSASTLPPQTQKN 303
            K+     LTP       YAVNTM PPY P+      + A   YA+PN  S L PQT ++
Sbjct: 282 PKFG-PSALTPDG-----YAVNTMAPPYWPTWSRDRNNPA---YAEPNQPSVLVPQTHEH 332

Query: 304 IGDLLSGKGVSWAWYAGAWNSTLKVAQGDRKFPSPKPNFQFHHQPFNYFASMDPVKNAAY 363
           IGD L+ KG+ WAWYAGAW +TL   +  +  P   PNFQ+HHQPFNYF ++ P +N A 
Sbjct: 333 IGDKLNKKGIDWAWYAGAWQATLDEFKDSKGIPK-IPNFQYHHQPFNYFKNLGP-ENPAE 390

Query: 364 RAEHIKD-------FDASFLQDAAAGKLPAVSFYKPQGNLNQHAGYADVASGDAHIADVV 416
           R + ++D           FL D  AG+LP V+FYKPQGNLN HAGYAD+ASGD HIA ++
Sbjct: 391 RNKRLRDGGLGDEARTNRFLADVEAGRLPPVTFYKPQGNLNLHAGYADIASGDRHIAHII 450

Query: 417 NKLRQSPQWKHMLIVVTYDENGGFWDHAAPPKADKWGPGTRIPAIIVSPYAKKGYIDSSL 476
             L+ SPQWK+M++VVT+DENGG+WDH APPK D+WGPGTR+PA++VSP+A+KG +D ++
Sbjct: 451 KSLQASPQWKNMVVVVTFDENGGWWDHVAPPKGDRWGPGTRVPALVVSPFARKGTVDHTV 510

Query: 477 YDTSSVLRFITRRWSLPVLDGIALRDKAIQANGGTPIGDLSNAL 520
           YDT+S+LR ITR + L  LDG+  RD+A+ A G  P+GDL+NAL
Sbjct: 511 YDTASILRLITRTFDLEKLDGLKQRDEAMIARGQQPMGDLTNAL 554


>gi|300311919|ref|YP_003776011.1| non-hemolytic phospholipase C
           (phosphatidylcholine choline phospho hydrolase) signal
           peptide protein [Herbaspirillum seropedicae SmR1]
          Length = 696

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 94/217 (43%), Gaps = 47/217 (21%)

Query: 306 DLLSGKGVSWAWYAGAWNSTLKVAQGDRKFPSPKPNFQFHHQPFNYFASMDPVKNAAYRA 365
           + L   GVSW  Y G     L    GD  +PS     Q+    +   A   P+   A   
Sbjct: 233 ERLEQHGVSWKVYQG--TEELHKDHGD--YPSDFNVLQYFFAQYQNAAPDSPLWQKACSK 288

Query: 366 EHIKDFDASFLQDAAAGKLPAVSFYKPQGNLNQHA----GYADVASGDAHIADVVNKLRQ 421
             + D      +D  +GKLP VS+  P     +H     GY     G  +I+ V++ L  
Sbjct: 289 FTLADL----ARDVNSGKLPQVSWLMPPKLSCEHPDRTPGY-----GAHYISQVLDILTA 339

Query: 422 SPQ-WKHMLIVVTYDENGGFWDHAAPP---------------------KADKWGP----- 454
           +P  W   +++V YDEN GF+DH  PP                     K D   P     
Sbjct: 340 NPALWSSTVLLVNYDENDGFFDHVVPPTPPLHAGQGLSTVETSAEFHRKGDYVNPADDLP 399

Query: 455 ---GTRIPAIIVSPYAKKGYIDSSLYDTSSVLRFITR 488
              G R+P +++SP++K GY+ S ++D +SV+RF+ +
Sbjct: 400 AGLGARVPMMVISPWSKGGYVCSEVFDHTSVIRFLEQ 436


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,852,636
Number of extensions: 84321
Number of successful extensions: 214
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 2
Length of query: 525
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 435
Effective length of database: 1,193,720
Effective search space: 519268200
Effective search space used: 519268200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)