BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0155.0003.p
         (160 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312529|ref|YP_003776621.1| hypothetical protein Hsero_3232...   139   8e-35

>gi|300312529|ref|YP_003776621.1| hypothetical protein Hsero_3232
           [Herbaspirillum seropedicae SmR1]
          Length = 483

 Score =  139 bits (351), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 88/128 (68%), Positives = 105/128 (82%)

Query: 1   VLALIGLAWAVIGIGLCVDALDGVLVFPLTLFGWLLLLESLATLFLASSGVGAQKTLRHV 60
           VLAL GL+W  IG+ L +DALDGVL FPLTLFG+LLLLESL TL++A+SG+GAQKTLR+V
Sbjct: 34  VLALAGLSWGAIGVSLAIDALDGVLNFPLTLFGYLLLLESLVTLWVANSGIGAQKTLRYV 93

Query: 61  KGGLFLLTALLIISSYPTSDMLLAMLFGTAFTIGGGLQIISAAIVRFPRWRMAVAGGVGQ 120
           KG LFLL A+L+I+ +  S+M LAMLFG AF IGG LQI SA +VRFPRWR A+ GG  Q
Sbjct: 94  KGALFLLIAVLVITQHQASNMALAMLFGIAFAIGGALQITSALVVRFPRWRTALVGGGVQ 153

Query: 121 ILIAIFXF 128
           IL+AIF F
Sbjct: 154 ILLAIFFF 161


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.145    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 374,044
Number of extensions: 9625
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,250,540
Effective search space: 102544280
Effective search space used: 102544280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)