BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0155.0002.p
         (230 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312530|ref|YP_003776622.1| transmembrane protein [Herbaspi...   176   1e-45
gi|300312046|ref|YP_003776138.1| hypothetical protein Hsero_2734...   127   7e-31

>gi|300312530|ref|YP_003776622.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 269

 Score =  176 bits (446), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/151 (60%), Positives = 108/151 (71%), Gaps = 1/151 (0%)

Query: 30  ALALLLVFSTRAGALLLVAPLEMRTPPLASIPPAAQAIVVLSGARLSNAPEYGHQDKPGF 89
            +A LLV STR G+LLL+APLE   P L S P  AQAIV+L   R+  APEYG  D    
Sbjct: 64  GVATLLVLSTRVGSLLLIAPLENSYPVLRS-PGQAQAIVILGSGRIDRAPEYGGLDDANA 122

Query: 90  ITLARLQYAARLHRDGGLPILVTGGKPDGSAESEAAVMARSLHDDFGVVTRWQEQASDTT 149
           I + RLQY A LHR  GLPILVTGG PDGS ESEAAVMAR+L  DF V  RWQE  S+TT
Sbjct: 123 IGMKRLQYGAYLHRQSGLPILVTGGNPDGSPESEAAVMARTLERDFAVPVRWQEGRSNTT 182

Query: 150 ADNARLTAPILRNAGVQQVLLVTDAMHMPRA 180
            DNA L+A +L+ AG+ ++LLVTD++HMPRA
Sbjct: 183 YDNATLSAAMLKEAGISRILLVTDSLHMPRA 213


>gi|300312046|ref|YP_003776138.1| hypothetical protein Hsero_2734
           [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score =  127 bits (320), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 75/153 (49%), Positives = 98/153 (64%), Gaps = 3/153 (1%)

Query: 31  LALLLVFSTRAGALLLVAPLEMRTPPL-ASIPPAAQAIVVLSGARLSNAPEYGHQDKPGF 89
           +ALL +    A A L+V PLE   P L A     AQAIVVL+   L  APEY  +D+P +
Sbjct: 46  VALLTLICMPAVADLMVRPLEQGYPVLSAEAARQAQAIVVLAAGSLDQAPEYEGRDQPDY 105

Query: 90  ITLARLQYAARLHRDGGLPILVTGG--KPDGSAESEAAVMARSLHDDFGVVTRWQEQASD 147
           + LARL+YAARL    GLP+LV+GG  + +   +++A  MA +L +DF    RW E  S+
Sbjct: 106 VALARLRYAARLQHQTGLPVLVSGGNAREETPEQNKALAMAEALREDFRTPVRWIEGGSE 165

Query: 148 TTADNARLTAPILRNAGVQQVLLVTDAMHMPRA 180
            T +NA  +A +LR  GVQ+VLLVTDAMHMPRA
Sbjct: 166 NTEENALRSAALLRADGVQRVLLVTDAMHMPRA 198


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 643,339
Number of extensions: 26270
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 2
Length of query: 230
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,231,600
Effective search space: 182276800
Effective search space used: 182276800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)