BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0155.0001.p (239 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 294 5e-81 gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis tra... 203 1e-53 gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis tra... 121 4e-29 gi|300311282|ref|YP_003775374.1| transmembrane sensor histidine ... 90 2e-19 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 294 bits (752), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 136/224 (60%), Positives = 177/224 (79%) Query: 2 KLSFKQRLWAPLVISLIALLAISIFNAYQAHNIRLEERKKDLINVAQVAMSTIKEYGELA 61 +LSF ++LW PLV+SLIALLAISIF+A NIRLEERK DL N+ Q A+S +K YG LA Sbjct: 3 QLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGALA 62 Query: 62 KNGTMSKEEAQKTALARVKMMRYGTDGYFSVSNSSAVTVMHPIKPELNGKDLTNFKDPAG 121 +G +SKE+AQK A +K +RYGTDGYFS+S S + VMHPIK EL+GKDL+NFKDPAG Sbjct: 63 DSGALSKEDAQKLAKQAIKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLSNFKDPAG 122 Query: 122 NQVFVDISKAAASPQGGFINYIWPKVGSPDPVPKTSYAFRYEPWDWIVTTGVYMDDVNAA 181 N +FV+I+KA + P+GGF++Y+WPKVG+ +PVPKTS+ Y+PWDW +TTG YMDD+NAA Sbjct: 123 NNLFVEITKAGSKPEGGFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDINAA 182 Query: 182 FTQSVYQLIAIVAGFAIVLIALVVVNNRSILRTIGGDPGDAAEI 225 F ++++Q+ + A + L+ALV+V N ILRTIGGDP AAE+ Sbjct: 183 FLRTLWQMALLFAAVSAALVALVIVINHGILRTIGGDPAQAAEV 226 >gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 532 Score = 203 bits (517), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 93/241 (38%), Positives = 159/241 (65%), Gaps = 5/241 (2%) Query: 3 LSFKQRLWAPLVISLIALLAISIFNAYQAHNIRLEERKKDLINVAQVAMSTIKEYGELAK 62 LS K++LW PLV S +ALL +S+++AYQ ++++ ER++ L +V ++A +TI Y +L Sbjct: 4 LSLKKKLWLPLVFSWMALLFLSVWHAYQTRDLQIAERERGLQDVTEMAYTTIAGYAKLES 63 Query: 63 NGTMSKEEAQKTALARVKMMRYGTDGYFSVSNSSAVTVMHPIKPELNGKDLTNFKDPAGN 122 +G +S+E+AQK A+AR++ RY DGY ++ ++++V VMHPI +L+G+++ +FKD GN Sbjct: 64 DGKLSREDAQKAAIARIRDQRYTGDGYVTLVDANSVIVMHPINSKLDGRNMLDFKDAKGN 123 Query: 123 QVFVDISKAAASPQG-GFINYIWPKVGSPDPVPKTSYAFRYEPWDWIVTTGVYMDDVNAA 181 +++ I+ +S G G++ Y WP+ GS P PK + R++PW+W + VY DD+ A Sbjct: 124 ELYKMIAATGSSGAGKGYLEYWWPRPGSDQPSPKMGFVKRFKPWNWDLICSVYSDDIQAD 183 Query: 182 FTQSVYQLIAIVAGFAIVLIALVVVNNRSILRTIGGDPGDAAE----IXAPDYYQNYHIF 237 F +++ Q + ++ G ++L + + +R+I R+IGG+PG+AAE I A D H Sbjct: 184 FRRALIQAVVVLIGLGVLLSLIAGMVSRNIFRSIGGEPGEAAEMARKIAAGDLTGVIHTT 243 Query: 238 Q 238 Q Sbjct: 244 Q 244 >gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 121 bits (304), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 4 SFKQRLWAPLVISLIALLAISIFNAYQAHNIRLEERKKDLINVAQVAMSTIKEYGELAKN 63 S K +L + LV+ LL ++ ++A+ A ++ERK L V + A +K Y Sbjct: 3 SLKAQLLSALVVMWAGLLLLAAWSAFSARENMIDERKDGLRRVVEAANGVVKSYVADVAA 62 Query: 64 GTMSKEEAQKTALARVKMMRYGTDGYFSVSNSSAVTVMHPIKPELNGKDLTNFKDPAGNQ 123 G +SKEEAQK AL R+ MRY D Y + +S V +M P + GK++ + KD G Sbjct: 63 GRVSKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMVGKNVADRKDSEGKA 122 Query: 124 VFVDISKAAASPQGGFINYIWPKVGSPDP--VPKTSYAFRYEPWDWIVTTGVYMDDVNAA 181 +V++ K Q GF+ Y+ G+ D PK SY + WDW + TGV++ DV A Sbjct: 123 YYVEMMKVGQEKQHGFVQYMGRLPGTDDSNRTPKMSYVVHNQDWDWFIVTGVFLSDVQAQ 182 Query: 182 FTQSVYQLIAIVAGFAIVLIALVVVNNRSILRTIGGDPGDAAEI 225 F +++L+ I+ +V+ +++ R I ++GG+P A +I Sbjct: 183 FRADLFRLLGILLVVGVVVSVMMLAIIRRITGSLGGEPAYAVDI 226 >gi|300311282|ref|YP_003775374.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 464 Score = 90.1 bits (222), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 21/197 (10%) Query: 1 MKLSFKQRLWAPLVISLIALLAISIFNAYQAHNIRLEERKKDLINVAQVAM--STIKEYG 58 MKL K ++ +V +A AI++ YQA + L +++ + A +A + ++ Y Sbjct: 1 MKLRQKI-IFLAIVPLCLAFTAIALVVRYQA--VELASQQRAAVEAAYLASKNTELRHYV 57 Query: 59 ELAKNGTMS-----------KEEAQKTALARVKMMRYGTDGYFSVSNSSAVTVMHPIKPE 107 +LA++ KEEA+ + + +G DGYF V + + ++MHP +PE Sbjct: 58 DLAQHALAHLYDTGRTDDAIKEEARHL----LADLEFGDDGYFFVYDDTGRSIMHPRQPE 113 Query: 108 LNGKDLTNFKDPAGNQVFVDISKAAASPQGGFINYIWPKVGSPDPVPKTSYAFRYEPWDW 167 L G ++ N++D +G+ + + A GG+ Y+W K S PK Y W W Sbjct: 114 LVGSEMWNWRDASGSFTIQHLIERARQG-GGYERYLWRKPSSKTVAPKLGYVISLPRWGW 172 Query: 168 IVTTGVYMDDVNAAFTQ 184 ++ TG+Y+DDV AA Q Sbjct: 173 VIGTGIYLDDVEAALAQ 189 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 683,516 Number of extensions: 26297 Number of successful extensions: 92 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 4 Length of query: 239 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 157 Effective length of database: 1,231,600 Effective search space: 193361200 Effective search space used: 193361200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)