BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0153.0055.p
         (107 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309823|ref|YP_003773915.1| rhodanese-related sulfurtransfe...   196   3e-52
gi|300309504|ref|YP_003773596.1| transmembrane protein [Herbaspi...    63   6e-12

>gi|300309823|ref|YP_003773915.1| rhodanese-related
           sulfurtransferase [Herbaspirillum seropedicae SmR1]
          Length = 107

 Score =  196 bits (498), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 90/107 (84%), Positives = 96/107 (89%)

Query: 1   MEHITAPELAAWIADPDRPTPLLLDVREPWEFETCRIEAAQLMPMNTIPGRFSELDEEQP 60
           MEHI+A ELAAWI DPDRPTPLLLDVREPWE +TC I  +QL+PMNTIPGRFSELDEEQP
Sbjct: 1   MEHISATELAAWINDPDRPTPLLLDVREPWEHQTCHIAGSQLVPMNTIPGRFSELDEEQP 60

Query: 61  VVCICHHGARSMQVAAFLERQGFANVTNLTGGIHAWAKQVDPAMPTY 107
           VVCICHHG RSMQVAAFLERQGF  V NL+GG+HAWA QVDPAMPTY
Sbjct: 61  VVCICHHGGRSMQVAAFLERQGFTKVINLSGGVHAWASQVDPAMPTY 107


>gi|300309504|ref|YP_003773596.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 137

 Score = 62.8 bits (151), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 17  DRPTPLLLDVREPWEFETCRIEAAQLMPMNTIPGRFSELDE--EQPVVCICHHGARSMQV 74
           ++   L+LDVRE  +F    +  A+ +P+  +P R  ELD+   +PV+ +C  G ++ + 
Sbjct: 43  NQGKVLVLDVREAEQFAAGHLRDARNIPLKELPQRIGELDKLKGRPVIVVCQTGTQANRA 102

Query: 75  AAFLERQGFANVTNLTGGIHAWAKQVDP 102
            A L++ GF+ V  L GGI AW  Q  P
Sbjct: 103 EATLKKAGFSEVYGLNGGIAAWQGQGLP 130


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 385,310
Number of extensions: 13409
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 2
Length of query: 107
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 35
Effective length of database: 1,278,950
Effective search space: 44763250
Effective search space used: 44763250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)