BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0153.0053.p
         (210 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309821|ref|YP_003773913.1| transcription regulator protein...   348   2e-97
gi|300309825|ref|YP_003773917.1| TetR family transcription regul...    60   1e-10
gi|300310692|ref|YP_003774784.1| transcription regulator protein...    58   6e-10

>gi|300309821|ref|YP_003773913.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 211

 Score =  348 bits (892), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 164/210 (78%), Positives = 184/210 (87%)

Query: 1   MARSTKEEALETRSRILDAAEQVFYERGVSHTSLADVAKAADVTRGAIYWHFKNKSDLFD 60
           MARSTKEEALETRSRILDAAEQVF+ERGVS TSLADVAKAA+VTRGAIYWHFKNKSDLFD
Sbjct: 1   MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60

Query: 61  AMCERVRLPMEAIMEANADERVTDPLGEFIKGGVYVLKQAATDPRCRKVFDIIFNKCEFV 120
           AMCERVRLPMEA++E NA  +V DPLG+F++ GVYVL  AATD RCR+VFDIIFNKCEF 
Sbjct: 61  AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA 120

Query: 121 DHNDPILMRQRECHMQGMLRMEQILTNSIARGQLPPDLNIRRACLMAHAMFSGLLADWFF 180
           D +DPIL+RQRECH+ GMLR+EQIL N++ARGQLP  L+IR ACLM HA FSGLL DWFF
Sbjct: 121 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF 180

Query: 181 SPDSFDLELEAESLLTACIHAIKTAPTLLR 210
           SPDSFDL  E E +L A +HA+KTAP+L R
Sbjct: 181 SPDSFDLVSEGERVLAASMHALKTAPSLQR 210


>gi|300309825|ref|YP_003773917.1| TetR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 95/218 (43%), Gaps = 23/218 (10%)

Query: 1   MARSTKEEALETRSR-----ILDAAEQVFYERGVSHTSLADVAKAADVTRGAIYWHFKNK 55
           M+ S KE   E R +     +L AA Q+F ERG + T L DVA  A V++G +Y +F +K
Sbjct: 1   MSASAKEPRWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSK 60

Query: 56  SDLFDAMCERVRLPMEAIMEANADE---RVTDPLGEFIKGGVYVLKQAATDPRCRKVFDI 112
             LF ++     LP+    EA  D       D L E I G      Q A+    + +  +
Sbjct: 61  ESLFKSVVRAHMLPLLDEAEARVDSHDGHTADLLRELILG----WWQGASRSGLKGIAKL 116

Query: 113 IFNKCEFVDHNDPILMR--QRECHMQGMLRMEQILTNSIARGQLPP-DLNIRRACLMAHA 169
           +  +      N P L R    E   +G   + ++L   +ARG+  P D +  +  + A  
Sbjct: 117 MLAES----GNFPELARFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPI 172

Query: 170 MFSGLLADWFFSP---DSFDLELEAESLLTACIHAIKT 204
           M   +L D   +P      D      SL+  C+H +K 
Sbjct: 173 MML-MLWDQSLAPCAIAPIDSAAYLASLIDLCVHGLKA 209


>gi|300310692|ref|YP_003774784.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 204

 Score = 57.8 bits (138), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 62/127 (48%)

Query: 28  GVSHTSLADVAKAADVTRGAIYWHFKNKSDLFDAMCERVRLPMEAIMEANADERVTDPLG 87
           GV  T+L  VA +A +TRGA+YWHF +K  L  A+ E +R P E   + +A     +PLG
Sbjct: 23  GVRATTLEHVAASAALTRGAVYWHFPDKKALVTAVFEEMRWPFELGEDLSAYHACDNPLG 82

Query: 88  EFIKGGVYVLKQAATDPRCRKVFDIIFNKCEFVDHNDPILMRQRECHMQGMLRMEQILTN 147
              +     ++Q   D R R+  +I+       +  + + +R     ++ +  +  ++  
Sbjct: 83  LLREVLWLQMRQGVADLRQRRRMEIVLRYRGTPELPEELSLRLETMILRAVSELTAVINI 142

Query: 148 SIARGQL 154
           +  RG L
Sbjct: 143 AYERGTL 149


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 588,760
Number of extensions: 21459
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 3
Length of query: 210
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,236,335
Effective search space: 159487215
Effective search space used: 159487215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)