BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0153.0051.p
         (114 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309820|ref|YP_003773912.1| acriflavin resistance lipoprote...   162   8e-42
gi|300310689|ref|YP_003774781.1| RND family efflux transporter M...   105   1e-24
gi|300313894|ref|YP_003777986.1| RND family efflux transporter M...   104   2e-24
gi|300310851|ref|YP_003774943.1| RND family efflux transporter M...    58   2e-10

>gi|300309820|ref|YP_003773912.1| acriflavin resistance lipoprotein
           A [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score =  162 bits (409), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 77/108 (71%), Positives = 93/108 (86%)

Query: 1   MPPGEVSVVTIAPERITISNELPGRLEATRIAEVRARVAGIILKRTFREGSEVKAGEVLY 60
           MPP EVSVVTIAP+R+ I+NELPGR+EA R+A+VRARVAGI+ KR F+EGSEVK G+VL+
Sbjct: 34  MPPSEVSVVTIAPQRVAITNELPGRVEAFRVAQVRARVAGIVQKRVFKEGSEVKEGQVLF 93

Query: 61  RIDPATFKANYDSAQATLAKNQATLTQATLKAQRYKPLVEVNXKKKQD 108
           +IDPA +KA+ +SAQATLA+ QA LTQ TL AQRYKPLVEVN   KQ+
Sbjct: 94  KIDPAQYKASLESAQATLARAQANLTQTTLTAQRYKPLVEVNAVSKQE 141


>gi|300310689|ref|YP_003774781.1| RND family efflux transporter MFP
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 400

 Score =  105 bits (261), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 74/103 (71%)

Query: 6   VSVVTIAPERITISNELPGRLEATRIAEVRARVAGIILKRTFREGSEVKAGEVLYRIDPA 65
           + VVT+  + + +  ELPGR    +IA+VR +V GII  R+FREGS+VKAG+VLY+I+PA
Sbjct: 41  LGVVTVHAQPVELHTELPGRTSPYQIADVRPQVNGIIKARSFREGSDVKAGQVLYQINPA 100

Query: 66  TFKANYDSAQATLAKNQATLTQATLKAQRYKPLVEVNXKKKQD 108
           +++A YDS+ A LAK +A++  A LKA RYK LV +    +QD
Sbjct: 101 SYQAAYDSSVAALAKAEASVRTARLKASRYKELVAIKAVSQQD 143


>gi|300313894|ref|YP_003777986.1| RND family efflux transporter MFP
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score =  104 bits (259), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 73/104 (70%)

Query: 5   EVSVVTIAPERITISNELPGRLEATRIAEVRARVAGIILKRTFREGSEVKAGEVLYRIDP 64
           EV  V +  +R  ++ ELPGR  A   A++R +V GII KR F+EGS VKAG+ LY+IDP
Sbjct: 48  EVGYVVVKAQRQALTTELPGRTTAYLAADIRPQVGGIIQKRLFKEGSTVKAGQPLYQIDP 107

Query: 65  ATFKANYDSAQATLAKNQATLTQATLKAQRYKPLVEVNXKKKQD 108
           A+++A YDSA+A+L K +ATL  + LKA+RY  L +++   KQD
Sbjct: 108 ASYQAAYDSARASLLKAEATLASSKLKAERYAELNKIDAVSKQD 151


>gi|300310851|ref|YP_003774943.1| RND family efflux transporter MFP
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 466

 Score = 58.2 bits (139), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 47/76 (61%)

Query: 24  GRLEATRIAEVRARVAGIILKRTFREGSEVKAGEVLYRIDPATFKANYDSAQATLAKNQA 83
           G +  T  A VRARV G ++K  ++EG  VKAG++L  IDP + +A    A+  LA+++A
Sbjct: 52  GAVTPTATATVRARVDGQLMKLHYKEGQVVKAGDLLAEIDPRSLQAALTQAEGQLARDRA 111

Query: 84  TLTQATLKAQRYKPLV 99
            L  A L  +RY+ L+
Sbjct: 112 LLASARLDLKRYQTLL 127


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.127    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 288,111
Number of extensions: 9050
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 6
Length of query: 114
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 41
Effective length of database: 1,274,215
Effective search space: 52242815
Effective search space used: 52242815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 124 (52.4 bits)