BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0153.0043.p
         (116 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309816|ref|YP_003773908.1| 3-deoxy-d-manno-octulosonic-aci...   133   3e-33

>gi|300309816|ref|YP_003773908.1| 3-deoxy-d-manno-octulosonic-acid
          (KDO) transferase [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score =  133 bits (335), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/95 (70%), Positives = 74/95 (77%), Gaps = 1/95 (1%)

Query: 1  MRLLYSALWWIGLPFVLLRLWRRGRKEPGYRQHIGERLGFYGHAARQSAQPLIWVHAVSV 60
          MR LYSALWW  +P VLLRLWRRGR+EPGYR H+ ERLGFY       A+  IWVHAVSV
Sbjct: 1  MRWLYSALWWFAMPLVLLRLWRRGRQEPGYRAHVAERLGFYPRLPDPQAR-FIWVHAVSV 59

Query: 61 GETRAAQPLIEALLRTYPQHAILLTHMTATGRATG 95
          GETRAA+PL++ALL  YP   ILLT MTATGRATG
Sbjct: 60 GETRAAEPLVDALLSRYPDCKILLTCMTATGRATG 94


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 350,030
Number of extensions: 13367
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,274,215
Effective search space: 54791245
Effective search space used: 54791245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 124 (52.4 bits)