BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0153.0037.p
         (365 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309813|ref|YP_003773905.1| phosphomannomutase [Herbaspiril...   626   0.0  
gi|300310717|ref|YP_003774809.1| phosphoglucosamine mutase [Herb...   100   2e-22

>gi|300309813|ref|YP_003773905.1| phosphomannomutase [Herbaspirillum
           seropedicae SmR1]
          Length = 458

 Score =  626 bits (1614), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 295/343 (86%), Positives = 318/343 (92%)

Query: 1   MTNVSPSIFKAYDIRGIVGHTLNAEVAKQIGQAFGSAALAKGQTAVVIGRDGRLSGPELS 60
           MT++SPSIFKAYDIRGI+G TL+  VA +IGQAFG+AALAKGQ  VVIGRDGRLSGPEL+
Sbjct: 1   MTSLSPSIFKAYDIRGIIGKTLDGTVAYRIGQAFGAAALAKGQKKVVIGRDGRLSGPELA 60

Query: 61  AALAAGLQASGVDVIDLGVVATPMVYFGTHVLGTQSGVMVTGSHNPPDYNGFKMVLAGEA 120
           A LA GLQA GVDVIDLG+VATPMVYFGTHVL TQSG+MVTGSHNPPDYNGFKMVLAGEA
Sbjct: 61  AELARGLQAVGVDVIDLGMVATPMVYFGTHVLDTQSGIMVTGSHNPPDYNGFKMVLAGEA 120

Query: 121 IHGETIQALYQAIVKNSFATGAGSYRTHDIRKQYIDRIVGDAKLARPMKIAVDCGNGVAG 180
           IHGETIQALY AIVK  F  GAG Y THDI+  YI+R++ D KLARP+KIAVDCGNGVAG
Sbjct: 121 IHGETIQALYHAIVKGDFPQGAGGYATHDIKAAYIERMLADVKLARPLKIAVDCGNGVAG 180

Query: 181 AFAGELYRALGCEVTELFCEVDGTFPNHHPDPAHPENLQDLIRCLQETDNEIGLAFDGDG 240
           AFAGE+YR LGCEVTELFCEVDGTFPNHHPDPAHPENLQDLIRCL+ETD E+GLAFDGDG
Sbjct: 181 AFAGEIYRTLGCEVTELFCEVDGTFPNHHPDPAHPENLQDLIRCLRETDCELGLAFDGDG 240

Query: 241 DRLGVVTKDGQIIYPDRQLMLFAADVLTRHPGREILYDVKCTRHLAPWISARGGQPLMWK 300
           DRLG+VTKDGQIIYPDRQLMLFA DVLTRHPG+EILYDVKCTRHLAPWI+ARGG+PLMWK
Sbjct: 241 DRLGLVTKDGQIIYPDRQLMLFAEDVLTRHPGKEILYDVKCTRHLAPWITARGGRPLMWK 300

Query: 301 TGHSLVKAKLRETGAPLGGEMSGHVFFKDRWYGFDDGLYAGAR 343
           TGHSLVKAKLRETGAPLGGEMSGH+FFKDRW+GFDDGLYAG R
Sbjct: 301 TGHSLVKAKLRETGAPLGGEMSGHIFFKDRWFGFDDGLYAGVR 343


>gi|300310717|ref|YP_003774809.1| phosphoglucosamine mutase
           [Herbaspirillum seropedicae SmR1]
          Length = 444

 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 150/331 (45%), Gaps = 18/331 (5%)

Query: 14  IRGIVG-HTLNAEVAKQIGQAFGSAALAKGQ-----TAVVIGRDGRLSGPELSAALAAGL 67
           +RG VG   +  +   ++G A G   LAK +       V+IG+D R+SG  L AAL AG 
Sbjct: 11  VRGRVGVAPITPDFVMRLGYAAGKV-LAKAKDGMTRPTVLIGKDTRISGYMLEAALEAGF 69

Query: 68  QASGVDVIDLGVVATPMVYFGTHVLGTQSGVMVTGSHNPPDYNGFKMVLAG-----EAIH 122
            A+GVDV   G + TP V + T  L   +GV+++ SHNP   NG K   A      +++ 
Sbjct: 70  AAAGVDVWLAGPLPTPAVAYLTRALRLSAGVVISASHNPYHDNGIKFFSASGNKLPDSVE 129

Query: 123 GETIQALYQAIVKNSFATGAGSYRTHDIRKQYID---RIVGDAKLARPMKIAVDCGNGVA 179
            +   AL Q +          + R  D   +YI+       +A   R M++ VDC +G A
Sbjct: 130 ADIEAALEQPMDCVPSEKLGKARRLSDAPGRYIEFCKSTFPNAMNLRGMRLVVDCAHGAA 189

Query: 180 GAFAGELYRALGCEVTELFCEVDGTFPNHHPDPAHPENLQDLIRCLQETDNEIGLAFDGD 239
              A  ++  LG EV  +  + DG   N       P+    L+  ++E   ++G+A DGD
Sbjct: 190 YNIAPHVFHELGAEVITIGNQPDGLNINEDCGATAPKT---LVASVREYRADLGIALDGD 246

Query: 240 GDRLGVVTKDGQIIYPDRQLMLFAADVLTRHPGREILYDVKCTRHLAPWISARGGQPLMW 299
            DRL +V  +G+I   D  L L   D L   P    +  +     L       G      
Sbjct: 247 ADRLIMVDGEGRIYNGDELLYLMVKDRLATGPVHGAVGTLMTNMALEVAFKKMGVPFERA 306

Query: 300 KTGHSLVKAKLRETGAPLGGEMSGHVFFKDR 330
           K G   V   L+E G  LGGE SGH+   D+
Sbjct: 307 KVGDRYVLEVLQEKGWVLGGEGSGHLLALDK 337


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,183,502
Number of extensions: 52072
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 2
Length of query: 365
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 279
Effective length of database: 1,212,660
Effective search space: 338332140
Effective search space used: 338332140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)