BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0153.0031.p
         (319 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313693|ref|YP_003777785.1| dTDP-glucose 4,6-dehydratase [H...    78   9e-16
gi|300313692|ref|YP_003777784.1| UDP-glucose 4-epimerase [Herbas...    70   2e-13

>gi|300313693|ref|YP_003777785.1| dTDP-glucose 4,6-dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 338

 Score = 78.2 bits (191), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 28/293 (9%)

Query: 14  VRFFLHHGDMTDSSSLVRILQQTQPDEVYNLAAQSHVAVSFEEPEYTANSDGLGVLRLLE 73
            R+     D+ D++++ R+  Q +P  V + AA+SHV  S   P     ++  G   +L 
Sbjct: 50  ARYLFSQTDICDTAAIARLFAQHRPRAVVHCAAESHVDRSIAGPAVFIQTNVNGTFSMLS 109

Query: 74  AI-----RILGLEKKT-RFYQASTSELYG-LVQEIPQ-KETTPFYPRSPYAVAKLYGYWI 125
           A       +   E+   RF   ST E++G L  + P   ET+P+ P SPY+ +K     +
Sbjct: 110 AAYDYWSTLPAAEQAAFRFLHISTDEVFGSLAADAPPFTETSPYAPNSPYSASKAASDHL 169

Query: 126 VVNYREAYGIYACNGILFNHESPIR-GETFVTRKITRALARIKLNLQECLYLGNMDAKRD 184
           V  +   YG+        N+  P    E  +   IT ALA   L +      G+    RD
Sbjct: 170 VRAFHSTYGLPVLITHCSNNYGPFHFPEKLIPLVITNALAGQPLPI-----YGDGQQVRD 224

Query: 185 WGHARDYVEMQWLMLQQDKP-EDFVIATGVQFSVRDFVNAAAEELG-ITLRWEGQGVEEK 242
           W H  D+     L+L + +P E + I    + +  + V    + L  +  + +GQ  ++ 
Sbjct: 225 WLHVADHCRAIELVLARARPGESYNIGGNSEKTNLEVVLTLCDLLDELAPKAQGQYRDQ- 283

Query: 243 AYDEKGVCRVAVDPRYFRPTEVETLLGDPTKAKEKLGWTPRTTFNELVCEMVR 295
                 +C V   P + R   V+T     +K + +LGW+P+  F + + + V+
Sbjct: 284 ------ICFVQDRPGHDRRYAVDT-----SKIQRELGWSPQHAFRQGLRQTVQ 325


>gi|300313692|ref|YP_003777784.1| UDP-glucose 4-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 127/280 (45%), Gaps = 40/280 (14%)

Query: 18  LHHGDMTDSSSLVRILQQTQPDEVYNLAAQSHVAVSFEEPEYTANSDGLGVLRLLEAIRI 77
           L  GD+ +   L  +L++ + + V + A    V  S E+P    +++ +G +RLLEA++ 
Sbjct: 54  LVKGDIRNREQLESVLREFKCEAVIHFAGLKAVGESVEQPLMYYDNNVVGTVRLLEAMQA 113

Query: 78  LGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYGYWIVVNYREAYGIYA 137
            G+  KT  + +S++ +YG  Q +P  E  P    +PY  +K+    ++ +Y  A+  + 
Sbjct: 114 TGV--KTIVF-SSSATVYGDPQYLPLDEAHPLSASNPYGRSKIVIEDMLRDYYRAHPDWK 170

Query: 138 CNGI-LFN----HESPIRGE--TFVTRKITRALARIKLNLQECLYLGNMD-------AKR 183
              +  FN    HES + GE    +   +   +A++ +  +E L +   D         R
Sbjct: 171 IALLRYFNPVGAHESGLIGEDPGGIPNNLMPFVAQVAIGRRERLNIWGGDYPTPDGTGVR 230

Query: 184 DWGHARDYVEMQWLMLQQ-DKPEDFVI--ATGVQFSVRDFVNAAAEELGITLRWEGQGVE 240
           D+ H  D        LQ  D P+ F +   TGV +SV D + A  +  G TL +    + 
Sbjct: 231 DFIHVVDLARGHVAALQALDAPQCFAVNLGTGVGYSVLDVLKAYEKACGKTLPY---AIA 287

Query: 241 EKAYDEKGVCRVAVDPRYFRPTEVETLLGDPTKAKEKLGW 280
           E+                 RP ++ +   +P +AK KLGW
Sbjct: 288 ER-----------------RPGDIASCYANPAEAKRKLGW 310


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 969,983
Number of extensions: 38855
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 319
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,217,395
Effective search space: 284870430
Effective search space used: 284870430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)