BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0151.0006.p
         (244 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311905|ref|YP_003775997.1| squalene/phytoene dehydrogenase...   259   2e-70

>gi|300311905|ref|YP_003775997.1| squalene/phytoene dehydrogenase;
           carotene 7,8-desaturase [Herbaspirillum seropedicae
           SmR1]
          Length = 443

 Score =  259 bits (662), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 147/197 (74%), Gaps = 2/197 (1%)

Query: 40  HVLAALFRATGLTREDKLALARFSTTARWMGWQLHEDCSVAELLDRFDQTDRLNRLMWTP 99
           HV  AL RA GLTREDK+ALARFSTTARWMGWQLH+DCSV+ELL RFDQT R+ RLMW P
Sbjct: 113 HVAVALLRAKGLTREDKMALARFSTTARWMGWQLHQDCSVSELLARFDQTPRVIRLMWRP 172

Query: 100 LCIAALNTPPQRASAQVFLNVLRDSLGARRAASDMLIPRTDLTALFPQQAAAFVESRGGS 159
           LCIAALNTPP+RASAQVFLNVLRDSLGARRAASDMLIPR DL+AL P  AAA++  RGG 
Sbjct: 173 LCIAALNTPPERASAQVFLNVLRDSLGARRAASDMLIPRLDLSALLPDAAAAYLAKRGGL 232

Query: 160 VTCGQAVASI--SAAEGRWNVAFRQAAGTQSFDGVIVAVAPESAADLLDGLCDTTMLRAF 217
           V  G AVA +     +  W +  R       F GV++A  PE+AA LL GL DT+ L + 
Sbjct: 233 VQAGVAVAHLLPGQQDTTWRLQDRAGESLGEFAGVVLATGPEAAAQLLQGLHDTSRLESL 292

Query: 218 AYEPITTCYLQYPAHVR 234
            +EPITTCYL YP   R
Sbjct: 293 QHEPITTCYLHYPQGAR 309


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 716,453
Number of extensions: 27786
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,226,865
Effective search space: 197525265
Effective search space used: 197525265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)