BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0151.0001.p (338 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Her... 217 1e-57 gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Her... 210 2e-55 gi|300312721|ref|YP_003776813.1| ATP-dependent RNA helicase [Her... 178 5e-46 >gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] Length = 487 Score = 217 bits (552), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 118/274 (43%), Positives = 168/274 (61%), Gaps = 4/274 (1%) Query: 3 HKLNPSYFAIQGLVICPTRELADQVSNELRRLARFTENIKILTLCGGTAMRPQIASLEHG 62 H +P+ ++ L++ PTRELADQV++ + RFT ++ + GG M PQ A L G Sbjct: 84 HSASPARHPVRALILTPTRELADQVADNVAAYCRFTP-LRSTVVFGGVDMAPQTAILRAG 142 Query: 63 THIVVGTPGRIRDHIGRGTINLATVQTLVLDEADRMVDMGFYEDIEGIVSACSARRQTLL 122 IV+ TPGR+ DH+ + T+NL+ Q LV+DEADRM+DMGF D++ I++ +RQ LL Sbjct: 143 VEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQRQNLL 202 Query: 123 FSATYPDDIRKASARFLRDPEEIKVEARHD--GDKIEQRFFEVSAEQRNFAVARLLQHYQ 180 FSAT+ +I+K +A F +P I+V AR + + + Q ++V + AV+ +++ + Sbjct: 203 FSATFSPEIKKLAASFQNNPVTIEV-ARSNATAENVTQTIYKVEEAAKADAVSFIIRQRE 261 Query: 181 PVSTLAFCNTKIHCRELAEELRAQGFSALALYGDLEQRERDEILVQFANQSCSVLVATDV 240 + F NTKI LA L A+G A A++GD Q ER L F VLVATDV Sbjct: 262 LKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIEVLVATDV 321 Query: 241 AARGLDIANLSAVINVDVTRDTEVHIHRIGRTGR 274 AARGLDIA L VIN D+ + E ++HRIGRTGR Sbjct: 322 AARGLDIAELPCVINYDLPYNAEDYVHRIGRTGR 355 >gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 210 bits (534), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 110/275 (40%), Positives = 170/275 (61%), Gaps = 7/275 (2%) Query: 3 HKLNPSYFAIQGLVICPTRELADQVSNELRRLARFTENIKILTLC--GGTAMRPQIASLE 60 K+N + I+ L++ PTRELA QV +R+ ++ + + + C GG + PQI L+ Sbjct: 69 QKIN-GHVPIRALILAPTRELAAQVEESVRQYGKY---LPLTSACIFGGVGINPQITLLK 124 Query: 61 HGTHIVVGTPGRIRDHIGRGTINLATVQTLVLDEADRMVDMGFYEDIEGIVSACSARRQT 120 G I+V TPGR+ DH+ +GT+NL +Q LVLDEADRM+DMGF DI +++A +RQ Sbjct: 125 RGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPPKRQN 184 Query: 121 LLFSATYPDDIRKASARFLRDPEEIKVEARHDG-DKIEQRFFEVSAEQRNFAVARLLQHY 179 LLFSAT+ D+I+K + L +P I+V R+ + I Q+ V ++++ +A L++ + Sbjct: 185 LLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLAHLIKTH 244 Query: 180 QPVSTLAFCNTKIHCRELAEELRAQGFSALALYGDLEQRERDEILVQFANQSCSVLVATD 239 Q L F TK +L E+L G +A+A++G+ Q R + L +F + + L+ATD Sbjct: 245 QWKQVLVFTRTKHGANKLVEQLGRDGITAMAIHGNKSQSARTKALAEFKDGKLTALIATD 304 Query: 240 VAARGLDIANLSAVINVDVTRDTEVHIHRIGRTGR 274 +AARG+DI L V+N D+ E ++HRIGRTGR Sbjct: 305 IAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGR 339 >gi|300312721|ref|YP_003776813.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] Length = 510 Score = 178 bits (452), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 106/274 (38%), Positives = 153/274 (55%), Gaps = 8/274 (2%) Query: 7 PSYFAIQG--LVICPTRELADQVSNELRRLARFTENIKILTLCGGTAMRPQIASLEHGTH 64 P Y Q LV+ PTRELA QV+ + + ++++++ GG Q+ L Sbjct: 90 PRYQPAQPKMLVLTPTRELALQVTTATDKYGAYMRRVRVVSILGGMPYPKQMQLLSRNPE 149 Query: 65 IVVGTPGRIRDHIGRGTINLATVQTLVLDEADRMVDMGFYEDIEGIVSACSARRQTLLFS 124 I+V TPGR+ DH+ G I+ + +Q LVLDEADRM+DMGF +DIE IV+A A RQT+LFS Sbjct: 150 ILVATPGRLIDHMESGKIDFSQLQILVLDEADRMLDMGFIDDIEKIVAATPATRQTMLFS 209 Query: 125 ATYPDDIRKASARFLRDPEEIKVEA---RHDGDKIEQRF-FEVSAEQRNFAVARLLQHYQ 180 AT + + R +P I++ + RH + I QR F +N + LL+ Sbjct: 210 ATLDGVVGNMAKRITNNPLTIQIASSSTRH--ENIMQRVHFVDDLSHKNRLLDHLLRDTS 267 Query: 181 PVSTLAFCNTKIHCRELAEELRAQGFSALALYGDLEQRERDEILVQFANQSCSVLVATDV 240 + F TK +A+ L GF+A AL+GD+ Q R+ L +LVATDV Sbjct: 268 IDQAVIFTATKRDADTIADRLNIAGFAAAALHGDMHQGARNRTLNSLRRGQVRMLVATDV 327 Query: 241 AARGLDIANLSAVINVDVTRDTEVHIHRIGRTGR 274 AARG+D+ ++ V N D+ + E ++HRIGRTGR Sbjct: 328 AARGIDVPGITHVFNYDLPKFAEDYVHRIGRTGR 361 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 981,118 Number of extensions: 39002 Number of successful extensions: 127 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 122 Number of HSP's successfully gapped: 3 Length of query: 338 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 252 Effective length of database: 1,212,660 Effective search space: 305590320 Effective search space used: 305590320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)