BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0150.0039.p (238 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H... 343 5e-96 gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [H... 138 3e-34 gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba... 109 2e-25 gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H... 105 4e-24 gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Her... 104 8e-24 >gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 391 Score = 343 bits (881), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 165/179 (92%), Positives = 172/179 (96%) Query: 1 VIRSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIKCGDAQIVIAGGQENMSASPHVLNNSR 60 VI+SGLPDMVPAFVVGKVCGSGLKAVQLAAQAI+CGDAQIVIAGGQENMSASPHVLNNSR Sbjct: 70 VIKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQENMSASPHVLNNSR 129 Query: 61 DGFRMGDAKLTDTMIVDGLWDVYNQYHMGITAENVAKKYDISRKEQDEFAAASQNKAEAA 120 DGFRMGDAKLTDTMIVDGLWDVYNQYHMGITAENVAKK++ISR+EQD FAAASQNKAEAA Sbjct: 130 DGFRMGDAKLTDTMIVDGLWDVYNQYHMGITAENVAKKFEISREEQDAFAAASQNKAEAA 189 Query: 121 QKAGKFKDEIVPIEIKNKKETVVFDTDEFVKPGVTAEALGALRPAFDKEGTVTAGNXAG 179 QKAGKFKDEIVPIEIK KKETVVFDTDEFVK GVTAE+L LRPAFDK GTVTAGN +G Sbjct: 190 QKAGKFKDEIVPIEIKGKKETVVFDTDEFVKHGVTAESLATLRPAFDKAGTVTAGNASG 248 >gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 138 bits (348), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 76/182 (41%), Positives = 109/182 (59%), Gaps = 7/182 (3%) Query: 2 IRSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIKCGDAQIVIAGGQENMSASPHVLNNSRD 61 +R+GLP V + KVCGS ++AV L +I G A +V+AGG E+MS +P++L +R Sbjct: 76 LRAGLPQTVACATLNKVCGSAMQAVMLGHDSILAGSASMVVAGGMESMSNAPYLLPKARR 135 Query: 62 GFRMGDAKLTDTMIVDGLWDVY-NQYH---MGITAENVAKKYDISRKEQDEFAAASQNKA 117 G+R+G +L D M +DGL D Y +QY MG AE+ A ++ +R +QD FA S +A Sbjct: 136 GYRLGHDRLLDHMFLDGLEDAYSDQYRGRLMGTFAEDCASEFGFTRAQQDAFAVQSTLRA 195 Query: 118 EAAQKAGKFKDEIVPIEIKNKKETVVFDTDEFVKP-GVTAEALGALRPAFDKEGTVTAGN 176 A G F E+VP+++ KK +VV DE P V E + L+PAF +GTVTA N Sbjct: 196 RQAISGGGFDWEVVPVDVAGKKGSVVISQDE--GPMAVNLERIATLKPAFSVDGTVTAAN 253 Query: 177 XA 178 + Sbjct: 254 SS 255 >gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 109 bits (273), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/184 (42%), Positives = 105/184 (57%), Gaps = 7/184 (3%) Query: 2 IRSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIKCGDAQIVIAGGQENMSASPHVLNNSRD 61 + +GLP VP V ++CGS L AV +AA+AIK G+ Q++IAGG E+M+ +P V+ + Sbjct: 72 LLAGLPIAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMTRAPFVMGKAES 131 Query: 62 GFRMGDAKLTDTMI----VDGLWDV-YNQYHMGITAENVAKKYDISRKEQDEFAAASQNK 116 F A + DT I V+ L Y M TAENVA + I+R +QD FA SQ + Sbjct: 132 AFAR-SAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFQINRADQDAFALRSQQR 190 Query: 117 AEAAQKAGKFKDEIVPIEIKNKK-ETVVFDTDEFVKPGVTAEALGALRPAFDKEGTVTAG 175 AAQ AG F EI P+ I KK + +V TDE +P T L L+ +GTVTAG Sbjct: 191 WAAAQAAGFFAGEIAPLTIPQKKGDPLVVTTDEHPRPDTTLATLAKLKGVVRPDGTVTAG 250 Query: 176 NXAG 179 N +G Sbjct: 251 NASG 254 >gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 105 bits (261), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 74/185 (40%), Positives = 106/185 (57%), Gaps = 8/185 (4%) Query: 1 VIRSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIKCGDAQIVIAGGQENMSASPHVLNNSR 60 ++ +GLP VP + ++CGSG+ A+ AA+AIK G+ Q++IAGG E+M+ +P V+ + Sbjct: 72 LLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESMTRAPFVMGKAD 131 Query: 61 DGFRMGDAKLTDTMI----VDGLW-DVYNQYHMGITAENVAKKYDISRKEQDEFAAASQN 115 F A + DT I V+ L Y M TAENVA + +SR +QD+FA SQ Sbjct: 132 SAFSR-QAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRADQDQFAVRSQA 190 Query: 116 KAEAAQKAGKFKDEIVPIEIKNKK-ETVVFDTDEFVKPGVTAEALGALRPAFDKEGTVTA 174 KA AAQ G EIVP+ I KK + + DE + + EAL L+ +G+VTA Sbjct: 191 KAAAAQANGTLAQEIVPVVIPQKKGDPITVTQDEHPR-ATSMEALARLKGVVKPDGSVTA 249 Query: 175 GNXAG 179 GN +G Sbjct: 250 GNASG 254 >gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Herbaspirillum seropedicae SmR1] Length = 398 Score = 104 bits (259), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 102/190 (53%), Gaps = 25/190 (13%) Query: 1 VIRSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIKCGDAQIVIAGGQENMSASPHVLNNSR 60 V+ +GLP+ + + + C SG+ A+ +AA I+ G+A ++IA G E+MS P + Sbjct: 77 VLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAAGAESMSMVPMM----- 131 Query: 61 DGFRMGDAKLTDTMIVDGLWD--VYNQYHMGITAENVAKKYDISRKEQDEFAAASQNKAE 118 GF ++ ++ D V Y MG+TAE VA+++ +SR+ QDEF+ AS KA Sbjct: 132 -GFH-------PSININAFKDENVGMAYGMGLTAEKVAQQWKVSREAQDEFSLASHQKAI 183 Query: 119 AAQKAGKFKDEIVPIEIKNK----------KETVVFDTDEFVKPGVTAEALGALRPAFDK 168 AAQ+AG+F DE+ EI + +T DE + AL L+P F Sbjct: 184 AAQEAGEFADEMTSFEIVERFPNLATGEIDVKTRTVSLDEGPRADSNLAALAKLKPVFAA 243 Query: 169 EGTVTAGNXA 178 +G+VTAGN + Sbjct: 244 KGSVTAGNSS 253 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 574,898 Number of extensions: 18015 Number of successful extensions: 83 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 75 Number of HSP's successfully gapped: 6 Length of query: 238 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 156 Effective length of database: 1,231,600 Effective search space: 192129600 Effective search space used: 192129600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)